Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002618-TA|BGIBMGA002618-PA|IPR003591|Leucine-rich
repeat, typical subtype, IPR001611|Leucine-rich repeat
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 48 6e-06
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 38 0.004
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 33 0.11
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 33 0.19
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 32 0.25
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 31 0.57
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 28 5.3
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 28 5.3
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 28 5.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 7.0
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 27 9.3
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 47.6 bits (108), Expect = 6e-06
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 414 IHLSNNKLTTINNTVFSHCPKLMQINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLS 473
++L +N+L T + L +NL+YN LT + K F ++L L + GN L
Sbjct: 811 LYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNEL---- 866
Query: 474 AEIFVHTPAMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITE--IKQNELDN 531
A + + + A + L+ +A L KN L+ +L FL++S N + +++ E +
Sbjct: 867 ANLSISSTAQVLLETLYANGNRLSSFPKNEALSK--SLRFLDISTNNLQNLAVEKAEKKS 924
Query: 532 LNKLRTLDITN 542
L KL L+ N
Sbjct: 925 LTKLPQLEYLN 935
Score = 47.2 bits (107), Expect = 8e-06
Identities = 74/327 (22%), Positives = 136/327 (41%), Gaps = 26/327 (7%)
Query: 221 LNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATLHLLKNPIDTVY 280
L+++ +NL + + +N LP D +L L + N + +
Sbjct: 410 LDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDISNN-LRSPR 468
Query: 281 GLQIS---DLLTLNAGQTNIKFVGPSMFNGMGL--IANLNLSGNSIEKIHNQAFHKLVEX 335
G I+ L LN + +I + P +F+G+ + LN++ N + + + + LV
Sbjct: 469 GKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRY-LVNL 527
Query: 336 XXXXXXXXXXXXMSSILIKENIELDIFKISNNPRLKHLPVEGFTCSSDQVNIYFFGASDC 395
++I E +L+ S+N + G + + F S+
Sbjct: 528 TYLDLSYNNFVTFP-LIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNR 586
Query: 396 GLEEIYDNSLKTFSALAIIHLSNNKLTTINNTVFSHCPKLMQINLAYNMLTTLDPKLFAK 455
+EI LK L I LS N +T I + S CPKL IN+A N+L+ +
Sbjct: 587 LPQEI--GLLKN---LETIDLSYNAITNIAS--LSECPKLNSINVACNLLSFYE----YS 635
Query: 456 NNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLN 515
N ++ PL + F ++ +++ D+SHA+L L K+ + L+N+ +
Sbjct: 636 NPSATFIDFSFCPLTTID-PAFSYS-NLVYFDISHAKLIGL----KDSVIETLVNVETVK 689
Query: 516 VSHNRITEIKQNELDNLNKLRTLDITN 542
V++N T I + + + L+ L TN
Sbjct: 690 VNYNHFTSI-SDAISAMQNLKYLSCTN 715
Score = 36.3 bits (80), Expect = 0.015
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 18/180 (10%)
Query: 378 FTCSSDQV----NIYFFGASDCGLEEIYDNSLKTFSALAIIHLSNNKLTTINNTVFSHCP 433
FT SD + N+ + ++C + + N L L + L N + V+
Sbjct: 695 FTSISDAISAMQNLKYLSCTNCEMSYVSPN-LGKLKHLVHLDLHANNIKIFPEEVWQ-VS 752
Query: 434 KLMQINLAYNMLTTL------DPKLFAKNNELAKLN-LQGNPLKVLSAEIFVHTPAMIWL 486
L +NL+ N+L + KL ++L + L GNP+ LS++ FV P + L
Sbjct: 753 SLKVVNLSSNILEKIKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQEFV-MPTVEEL 811
Query: 487 DMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNNPLA 546
+ L + D L L LN+S+N +TEI N + L+ L ++ N LA
Sbjct: 812 YLVDNRLGN----DCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELA 867
Score = 34.3 bits (75), Expect = 0.061
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 429 FSHCPKLMQINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDM 488
FS ++++ + L + K++ +EL LN+ N L + + LD+
Sbjct: 401 FSEKKITANLDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDI 460
Query: 489 SHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNL--NKLRTLDITNNPL 545
S+ L S + P+T L L LN+S N I E+ L N L+ L+I NN L
Sbjct: 461 SN-NLRS----PRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKL 514
Score = 34.3 bits (75), Expect = 0.061
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 435 LMQINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELT 494
L I+L+YN +T + A +E KLN +LS + + P+ ++D S LT
Sbjct: 597 LETIDLSYNAITNI-----ASLSECPKLNSINVACNLLSFYEYSN-PSATFIDFSFCPLT 650
Query: 495 SLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNN 543
++ P NL++ ++SH ++ +K + ++ L + T+ + N
Sbjct: 651 TI------DPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYN 693
Score = 31.5 bits (68), Expect = 0.43
Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 411 LAIIHLSNNKLTTINNTVFSHCPKLMQINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLK 470
L +++S+N + C KL +++++ N+ + + A +L LN+ N +
Sbjct: 431 LISLNVSHNLSLDLPLDFMERCVKLKRLDISNNLRSPRGKPITALR-QLEVLNMSRNDIY 489
Query: 471 VLSAEIF--VHTPAMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNE 528
L IF + ++ L++++ +L L H L+NL +L++S+N
Sbjct: 490 ELDPLIFSGLSRNSLKELNIANNKLFFL-----PHSTRYLVNLTYLDLSYNNFVTFPL-I 543
Query: 529 LDNLNKLRTLDITNNPLA 546
+ L++L TL+ ++N L+
Sbjct: 544 ITELSQLETLNFSHNLLS 561
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 38.3 bits (85), Expect = 0.004
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 381 SSDQVNIYFFGASDCGLEEIYDNSLKTFSALAIIHLSNNKLTTINNTVFSHCPKLMQINL 440
SS + + S C L+ I N + +L + LS N+LT I + P+L +NL
Sbjct: 328 SSSWSQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYAL-GELPQLCSLNL 386
Query: 441 AYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELTSL 496
A N +T + L L L N L LS + P++ LD+ +T +
Sbjct: 387 ASNKITGCRTFYHISLSHLQILVLSRNHLTSLSG--LENVPSLEKLDIRDNSITDV 440
Score = 33.5 bits (73), Expect = 0.11
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 457 NELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLNV 516
++L L LK + +F+ +++ LD+S ELT + + L L L LN+
Sbjct: 332 SQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI-----PYALGELPQLCSLNL 386
Query: 517 SHNRITEIKQNELDNLNKLRTLDITNNPLACSRDFENL 554
+ N+IT + +L+ L+ L ++ N L EN+
Sbjct: 387 ASNKITGCRTFYHISLSHLQILVLSRNHLTSLSGLENV 424
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 192 SSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDM 231
S + L S C ++ I N F ++ L+ L+++GN L+++
Sbjct: 332 SQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI 371
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 33.5 bits (73), Expect = 0.11
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 425 NNTVFSHCPKLMQINLAYNMLTTLDPK-LFAKNNELAKLNLQGNPLKVLSAEIFVHTPAM 483
+N V + + L+ N TLD K +F L N+Q LK + I P +
Sbjct: 837 SNFVIQPSLDIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQ---LKEVPKYIATSMPNL 893
Query: 484 IWLDMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQ--NELDNLNKLRTLDIT 541
LD+SH ++ ++ PL ++ L + NRI +++ + L NL +L LD+
Sbjct: 894 RVLDLSHNYISD---IESLKPLQMIHRLYLVG---NRIKKMRNLCDILANLKQLNVLDLR 947
Query: 542 NNPL 545
NPL
Sbjct: 948 MNPL 951
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 183 GSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDM 231
G+E +L V D++ + + +F N+ L YL+++ N L D+
Sbjct: 635 GNEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQLEDL 683
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 32.7 bits (71), Expect = 0.19
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 434 KLMQINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAEL 493
++ ++ L +N + ++ P++ K L LN++ N L+ E ++ LD+S ++
Sbjct: 53 RIARLALGHNFIKSIGPEIL-KFTRLRYLNIRSNVLREFP-ESLCRLESLEILDISRNKI 110
Query: 494 TSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNN 543
L L+NL L++S NR+ E+ + ++ L L I NN
Sbjct: 111 KQL-----PESFGALMNLKVLSISKNRLFEL-PTYIAHMPNLEILKIENN 154
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 32.3 bits (70), Expect = 0.25
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 553 NLMTWLNNHTVLPTGNSANVANMA-RDGKDDDATYSW--DFLTIKTCGTTVISHPVEPLS 609
N +T N+ L T + AN A ++ D + SW DFL++ T T+ + +
Sbjct: 34 NDLTAANSIVDLKTNSQHENANAAGKEYGDSGVSESWVLDFLSV-TGEKTISEFLAQKIW 92
Query: 610 AVSDEEIWERIDKDTEGNFDLKNTLDDGKIPDDTNAS 646
S+ ++ +D + +F++KN+ D + DT+AS
Sbjct: 93 KTSNGDLNVAVDMYFDESFNIKNSNPDSESQKDTDAS 129
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 31.1 bits (67), Expect = 0.57
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 425 NNTVFSHCPKLMQINLAYNMLTTLDPKLFAKN-NELAKLNLQGNPLKVLSAEIFVHTPAM 483
+NTV P L Q+++ L + D + + L L L+ N + + A F + +
Sbjct: 185 SNTVLL-IPHLTQLSVNGCGLNSKDVQWITETFPSLEVLYLEANEIILSKATSFKNLQFL 243
Query: 484 IWLDMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNN 543
L + A +L+ D + + V + LN+S + ++ + + L+KL LDI+ N
Sbjct: 244 QTLSL--ANNLNLYSAD-GYAVDVFQGINNLNLSSTSLADVAELPVHTLHKLTFLDISEN 300
Query: 544 PLACSRDFENLMTWLN 559
+ R ++L T N
Sbjct: 301 NIRDIRSLDHLRTLEN 316
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 5.3
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 212 FKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATLHL 271
F+N+PG+ +NV NL + P L D +F TE+A L
Sbjct: 221 FRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSA-----FGLLDSVFGSTTEVA--QL 273
Query: 272 LKN---PIDTVYGLQISDLLTLNAGQTNIKFVGPS 303
KN P + + ++ L+ + Q+ +K GPS
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPS 308
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 430 SHCPKLMQI--NLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSA 474
++CP+L+Q+ A DP L + +E+ + G P++V+S+
Sbjct: 193 NNCPRLVQLYEEFAERAAKLYDPLLAGRASEMMSQFMNGQPVRVVSS 239
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 27.9 bits (59), Expect = 5.3
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 429 FSHCPKLMQINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIW--L 486
F C L + +N+L LD + +NN + G+ + V I H PA++W
Sbjct: 385 FQSCSALFATFVKFNLLKALDYAMSHENNSVRN---AGSDILV---SIIDHEPAIVWQKF 438
Query: 487 DMSHAELTSLWK---VDKNHPLTVLINLLFLNVSHNRITEIKQ 526
D + +S V ++ L+ LIN+L + + +I +
Sbjct: 439 DQDRKDASSSLSNAHVSQHSLLSNLINILHKESNPGVLAQISE 481
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.5 bits (58), Expect = 7.0
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 427 TVFSHCPKLMQINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWL 486
++F + +N N + LD + F + L KL L + V S+E + T +
Sbjct: 1369 SLFKEEARFACLNFLRNFIPILDEQKF-REKHLIKLVLASIIVNVPSSENRLST---LMA 1424
Query: 487 DMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITEI 524
+ LT + K HPL V IN +L H +T+I
Sbjct: 1425 NFYAFSLTVMMK--PTHPLFVGINRYYLQRQHVDVTDI 1460
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.1 bits (57), Expect = 9.3
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 212 FKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATLHL 271
F+N+PG+ +NV NL + P L D +F TE A L
Sbjct: 221 FRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSA-----FGLLDSVFGSTTEAA--QL 273
Query: 272 LKN---PIDTVYGLQISDLLTLNAGQTNIKFVGPS 303
KN P + + ++ L+ + Q+ +K GPS
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPS 308
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,613
Number of Sequences: 5004
Number of extensions: 134534
Number of successful extensions: 409
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 30
length of query: 731
length of database: 2,362,478
effective HSP length: 78
effective length of query: 653
effective length of database: 1,972,166
effective search space: 1287824398
effective search space used: 1287824398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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