GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002617-TA|BGIBMGA002617-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
         (753 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...   118   1e-28
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    27   0.47 
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    23   5.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score =  118 bits (285), Expect = 1e-28
 Identities = 120/431 (27%), Positives = 207/431 (48%), Gaps = 36/431 (8%)

Query: 50  RRGLTDIPNGLGLQVTKLNISNNEFTKFP-ESLSRLHNLVNLDISSNQLKGLPDNALYNL 108
           ++   DI + L L +   +  ++    FP +++  L+ L  LD+S+N+L+ +PDN+ + L
Sbjct: 7   KQRFVDIGDSL-LTLKLTHALSSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFL 65

Query: 109 TALEVLNLSRNYFDSWLNLNPNDVLLPATHLKILDLSFNKFQTMGNLANQELLIRPSLET 168
            +L+ ++L     D+ + +          H  + ++ F+ F ++ N+          LE 
Sbjct: 66  RSLKKVHLQ----DNTIEMIHRGTFQGDIHRDLTEVYFS-FNSVRNVQQHTFADLIQLEQ 120

Query: 169 LILDHCEINSIHGRSPLSGLINIRVLKLNFNPLLRI-----QNLISSSLRSLFVSNCELT 223
           + LD   I S+  R+ ++ L +++ L L  N +  I     QNL    L  L ++   ++
Sbjct: 121 IHLDDNRIESLERRAFMN-LKSLKRLNLKGNKIATIAYETFQNL--PELEDLDLAYNSIS 177

Query: 224 SLNHNELMFLPSLT--HLKMSNNYRLELASSANNLFSQ--------SLKYIDISYCNILQ 273
           SL+ N    + SL   H+ MS+N  + L  + +  F Q        ++K +D+S+ NI  
Sbjct: 178 SLDFNIFDQVGSLGMFHVNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITS 237

Query: 274 PNLKGFP----SLRKAILNHNMVRYLESNAFANNTELEYLDLSNNNIASLRYDTFRGLKM 329
              + F     SL +  L HN +     + F N   L+ LDLS+N++  L +DTFR  K 
Sbjct: 238 VAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKK 297

Query: 330 LKHLDLSWNEIAVIPEDSLLEMPSLTQLKLSRNYLSRV--GHLRSMSVTILDMSSCELNT 387
           L+ LD S N I+ IP D    + +L  +  S N L  +     R   +  LD+S   L  
Sbjct: 298 LQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLLGK 357

Query: 388 IGKDSLE--GLQSIVELDLSQNLLSYIPDS---ISSNTLKYLNLNYNRISSINNLTFFML 442
           +   SL     Q++ ELDLS N +S +           L +L+L+YNR+  I+  TF  +
Sbjct: 358 LPLTSLSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDAGTFKGI 417

Query: 443 NRLTSLSVVGN 453
            RL SL++  N
Sbjct: 418 PRLASLNLGHN 428



 Score = 93.9 bits (223), Expect = 4e-21
 Identities = 124/490 (25%), Positives = 216/490 (44%), Gaps = 58/490 (11%)

Query: 36  LCRCNLDKTDIDCSRRGLTDIPNGLGLQVTKLNISNNEFTKFPE-SLSRLHNLVNLDISS 94
           L + +L    I+   RG       +   +T++  S N      + + + L  L  + +  
Sbjct: 68  LKKVHLQDNTIEMIHRGT--FQGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDD 125

Query: 95  NQLKGLPDNALYNLTALEVLNLSRNY-----FDSWLNLNPNDVLLPATHLKILDLSFNKF 149
           N+++ L   A  NL +L+ LNL  N      ++++ NL P    L   +  I  L FN F
Sbjct: 126 NRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNL-PELEDLDLAYNSISSLDFNIF 184

Query: 150 QTMGNLANQEL-LIRPSLETLILDHCEINSIHGRSPLSGLINIRVLKLNFNPLLRIQNL- 207
             +G+L    + +    L  L++           + L GL NI+VL L+FN +  +    
Sbjct: 185 DQVGSLGMFHVNMSHNKLINLVV--APSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQF 242

Query: 208 ---ISSSLRSLFVSNCELTSLNHNELMFLPSLTHLKMSNN--YRLELASSANNLFSQSLK 262
              +  SL  L++ + +L +   +    +P L  L +S+N  Y L+  +  N   ++ L+
Sbjct: 243 FRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRN---TKKLQ 299

Query: 263 YIDISYCNILQ-PN--LKGFPSLRKAILNHNMVRYLESNAFANNTELEYLDLSNNNIASL 319
           ++D S+  I + PN   +   +LR    +HN +R L  N F   T LE LD+S+N +  L
Sbjct: 300 WLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLF-RETGLERLDVSHNLLGKL 358

Query: 320 RYDTFR--GLKMLKHLDLSWNEIAVIPEDS-LLEMPSLTQLKLSRNYLSRV--------- 367
              +      + L  LDLSWN I+ +     L     L+ L LS N L ++         
Sbjct: 359 PLTSLSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDAGTFKGIP 418

Query: 368 -------GHLRSMSVTILDMS---------SCELNTIGKDSLEGLQS--IVELDLSQNLL 409
                  GH   +++ I  +S            L+ +    +  L +  ++ L L+ N L
Sbjct: 419 RLASLNLGHNSQLTLEINGLSFQGLEYTLLHLNLDNVSLSQVPALSTPNLLSLSLAFNSL 478

Query: 410 SYIPDSISSN--TLKYLNLNYNRISSINNLTFFMLNRLTSLSVVGNRFTMIWRRSFFDSN 467
             +   ++ N  +L+YLNL+YN +S++  +T   L  L  LS+ GN  T +   S   + 
Sbjct: 479 PTVALEVAGNISSLRYLNLDYNDLSAVPIVT-HSLTELRHLSLEGNPITTLSNTSLLGAA 537

Query: 468 PYLERLDLSD 477
             LE L+L +
Sbjct: 538 NQLEELNLKN 547



 Score = 61.3 bits (142), Expect = 2e-11
 Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 19/216 (8%)

Query: 281 SLRKAILNHNMVRYLESNAFANNTELEYLDLSNNNIASLRYDTFRGLKMLK--HLDLSWN 338
           SL++  L  N +  +    F N  ELE LDL+ N+I+SL ++ F  +  L   H+++S N
Sbjct: 141 SLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSLGMFHVNMSHN 200

Query: 339 EI---AVIP------EDSLLEMPSLTQLKLSRNYLSRVGH--LRSMSVTILDM--SSCEL 385
           ++    V P      +  L  + ++  L LS N ++ V     R + ++++ +     +L
Sbjct: 201 KLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKL 260

Query: 386 NTIGKDSLEGLQSIVELDLSQNLLSYIPDSISSNT--LKYLNLNYNRISSINNLTFFMLN 443
               KD    +  +  LDLS N L  +      NT  L++L+ ++NRIS I N  F  L 
Sbjct: 261 LNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLG 320

Query: 444 RLTSLSVVGNRFTMIWRRSFFDSNPYLERLDLSDNM 479
            L  +    NR   +    F ++   LERLD+S N+
Sbjct: 321 NLRIVDFSHNRLRSLPDNLFRETG--LERLDVSHNL 354



 Score = 40.7 bits (91), Expect = 4e-05
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 344 PEDSLLEMPSLTQLKLSRNYLSRVGH-----LRSMSVTILDMSSCELNTIGKDSLEGLQS 398
           P D++  +  L +L LS N L  V       LRS+    L  ++ E+   G    +  + 
Sbjct: 34  PSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQGDIHRD 93

Query: 399 IVELDLSQNLLSYIPDSISSNT--LKYLNLNYNRISSINNLTFFMLNRLTSLSVVGNRFT 456
           + E+  S N +  +     ++   L+ ++L+ NRI S+    F  L  L  L++ GN+  
Sbjct: 94  LTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIA 153

Query: 457 MIWRRSFFDSNPYLERLDLSDN 478
            I   + F + P LE LDL+ N
Sbjct: 154 TIAYET-FQNLPELEDLDLAYN 174


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 0.47
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 419 NTLKYLNLNYNRISSINNLTFFMLNRLTSLSVVGN 453
           N  +++N+  N     +   FF +N+ T L ++GN
Sbjct: 298 NISEFINVVLNNYPDFSAAGFFSINKTTLLQIIGN 332


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
          (isoform B) protein.
          Length = 96

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 51 RGLTDIPNGLGLQVTKLNISNNEFTK 76
          RGLT I NG GL    +  SN+   K
Sbjct: 56 RGLTIIQNGYGLPGHTIIASNHHLAK 81


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,118
Number of Sequences: 317
Number of extensions: 6633
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 753
length of database: 114,650
effective HSP length: 62
effective length of query: 691
effective length of database: 94,996
effective search space: 65642236
effective search space used: 65642236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)