Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002616-TA|BGIBMGA002616-PA|IPR003591|Leucine-rich
repeat, typical subtype, IPR001611|Leucine-rich repeat
(438 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 72 8e-15
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 23 6.7
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 8.9
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 72.1 bits (169), Expect = 8e-15
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 7/175 (4%)
Query: 79 LDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLRLSRNYLSELP 138
LDL N I IE ++F + NL+ L+LS+N++ +L LN L LS N ++ +
Sbjct: 364 LDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASID 423
Query: 139 KF---QSNSLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSNQIESIPDNFSSN--TLQE 193
+ L+ L LS +T++ D+L ++ L +DL N+I + + N L
Sbjct: 424 PLAFRNCSDLKELDLSGNELTSVP-DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTG 482
Query: 194 LDLSYNEIGSLTDRTFSSLPHLAVLNLRGNEFREVWSTSHFASNPFLREVHVKGN 248
L L N+IG+L+ LP+L +LNL N+ + V F N L + + GN
Sbjct: 483 LRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHV-ERYAFERNMRLEAIRLDGN 536
Score = 67.3 bits (157), Expect = 2e-13
Identities = 55/166 (33%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 77 RRLDLSRNKIKNIEEDS-FSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLRLSRNYLS 135
R LDLSRN+I ++E+S + L L L N I E + LT L T S N L
Sbjct: 215 RILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLD 274
Query: 136 ELPK--FQSN-SLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSNQIESIPDNFSSNT-- 190
LP+ F S LR +HL+Y + +L + + LL ++L+ N++ S D T
Sbjct: 275 SLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGS--DRVDETTFL 332
Query: 191 ----LQELDLSYNEIGSLTDRTFSSLPHLAVLNLRGNEFREVWSTS 232
L L+LSYN + + R F L L +L+LR N + S +
Sbjct: 333 GLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNA 378
Score = 59.3 bits (137), Expect = 6e-11
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 79 LDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKS--------------- 123
L++ + ++ + +S + NL L+L+ENR+ + + L S
Sbjct: 152 LEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNRRDSDDGSDGNDGDESSCR 211
Query: 124 --LNTLRLSRNYLSEL----PKFQSNSLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSN 177
+ L LSRN ++ L P L+ LHL I + D+L+ +T L + S N
Sbjct: 212 ADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYN 271
Query: 178 QIESIPDNFSSNT--LQELDLSYNEIGSLTDRTFSSLPHLAVLNLRGN 223
++S+P+ ++T L+E+ L+YN + L F+ L L VLNL GN
Sbjct: 272 SLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGN 319
Score = 54.8 bits (126), Expect = 1e-09
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 75 KFRRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLRLSRNYL 134
+ + L L RN I I D+ +G+T L + S N ++ L + + L + L+ N L
Sbjct: 238 QLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGL 297
Query: 135 SELPKFQSNSLRSLHLSYCLITNLQVDSLSEMT-----SLLEIDLSSNQIESIPDNFSSN 189
+LPK L L + L D + E T L+ ++LS N + I +
Sbjct: 298 RDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKD 357
Query: 190 T--LQELDLSYNEIGSLTDRTFSSLPHLAVLNLRGNEFREV 228
LQ LDL N I + F L +L L L N+ R V
Sbjct: 358 LFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTV 398
Score = 49.6 bits (113), Expect = 5e-08
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 77 RRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLRLSRNYLSE 136
+ LDL N+I N SF + L L L N I S +L +L L L+RN +
Sbjct: 457 KTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQH 516
Query: 137 LPK--FQSNS-LRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSNQIESIPDNFSSNTLQE 193
+ + F+ N L ++ L ++++ + + SLL ++LS N IE F L+
Sbjct: 517 VERYAFERNMRLEAIRLDGNFLSDIN-GVFTSIASLLLLNLSENHIEWFDYAFIPGNLKW 575
Query: 194 LDLSYNEIGSL 204
LD+ N I SL
Sbjct: 576 LDIHGNFIESL 586
Score = 47.6 bits (108), Expect = 2e-07
Identities = 62/283 (21%), Positives = 123/283 (43%), Gaps = 15/283 (5%)
Query: 10 LILTNNNFATFPSQLESFSRVQVLDLSGNHLNVPLPSYIENWXXXXXXXXXXXXYESWLN 69
L L+ N + P L + ++ LDL N ++ N + L+
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGN-LS 494
Query: 70 DGRQY---KFRRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNT 126
G + + L+L+RNK++++E +F L + L N +++ + + T+ SL
Sbjct: 495 RGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDING-VFTSIASLLL 553
Query: 127 LRLSRNYLSELP-KFQSNSLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSNQIESIPDN 185
L LS N++ F +L+ L + I +L + + +D S N+I +
Sbjct: 554 LNLSENHIEWFDYAFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPL 613
Query: 186 FSSNTLQELDLSYNEIGSLTDRTFSSLPHLAVLNLRGNEFREVWSTS----HFASNPFLR 241
++++ L ++ N I + TF+ +L +++ N + TS A + L
Sbjct: 614 SVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVAEDRPLP 673
Query: 242 EVHVKGNRWNCEGFSVNLWL---TYEFLTKEPSKIHDRASLIC 281
E ++ GN +NC S++ WL + T+E +I D +++C
Sbjct: 674 EFYIGGNPFNC-NCSMD-WLPGINNQTSTREYPRIMDLDNVMC 714
Score = 40.3 bits (90), Expect = 3e-05
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 71 GRQYKFRRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLRLS 130
GR+ R L ++ + I++I+ +F+G+ NL L L +NRI E L L L
Sbjct: 816 GRK-NMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQ 874
Query: 131 RN---YLSELPKFQSNSLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSN 177
N ++ L SL L LS + V ++ L+E+ L SN
Sbjct: 875 NNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSN 924
Score = 33.1 bits (72), Expect = 0.005
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 171 EIDLSSNQIESIPDN--FSSNTLQELDLSYNEIGSLTDRTFSSLPHLAVLNLRGNEFREV 228
E+ L N + + ++ ++ L ++ + I S+ +RTF+ L +L +L+L N RE+
Sbjct: 798 EVYLDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIREL 857
Query: 229 WSTSHFASNPFLREVHVKGN 248
F LRE++++ N
Sbjct: 858 -KGFEFERLSHLRELYLQNN 876
Score = 22.2 bits (45), Expect = 8.9
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
Query: 69 NDGRQYKFRRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLR 128
ND R + +D S ++ I T +Y L N + E + K++ L
Sbjct: 769 ND-RTWNTNAVDCSGLGVEEIPRRIPMDATEVY---LDGNVLRELQNHVFIGRKNMRVLY 824
Query: 129 LSRNYLSELPK--FQS-NSLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSNQIESIPDN 185
++ + + + F N+L+ LHL I L+ ++ L E+ L +N I I N
Sbjct: 825 VNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFI-GN 883
Query: 186 FSSNTLQELDL 196
+ L+ L++
Sbjct: 884 LTFLPLRSLEI 894
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 22.6 bits (46), Expect = 6.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 385 MPRLNSSFHSLPDFVDDEPSQRSRRSRSIGD 415
+P L + + L D + + Q RR+R + D
Sbjct: 316 LPELQHNLNILVDMCEQDIIQNDRRTRHLSD 346
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 22.2 bits (45), Expect = 8.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 156 TNLQVDSLSEMTSLLEID 173
TNL DS S T LLE+D
Sbjct: 725 TNLSGDSSSGTTLLLELD 742
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.316 0.131 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,025
Number of Sequences: 429
Number of extensions: 5363
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 13
length of query: 438
length of database: 140,377
effective HSP length: 60
effective length of query: 378
effective length of database: 114,637
effective search space: 43332786
effective search space used: 43332786
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)
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