GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002616-TA|BGIBMGA002616-PA|IPR003591|Leucine-rich
repeat, typical subtype, IPR001611|Leucine-rich repeat
         (438 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    81   1e-17
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   2.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   2.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   2.4  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   7.4  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 81.4 bits (192), Expect = 1e-17
 Identities = 56/152 (36%), Positives = 75/152 (49%), Gaps = 7/152 (4%)

Query: 79  LDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLRLSRNYLSELP 138
           LDLS N +  ++ D+F     L +LD S NRI+E    L     +L  +  S N L  LP
Sbjct: 277 LDLSHNSLYELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLP 336

Query: 139 K--FQSNSLRSLHLSYCLITNLQVDSLS--EMTSLLEIDLSSNQIESIPDNFSS---NTL 191
              F+   L  L +S+ L+  L + SLS     +L E+DLS N I S+           L
Sbjct: 337 DNLFRETGLERLDVSHNLLGKLPLTSLSLASAQTLSELDLSWNSISSLSHGGQLARFKCL 396

Query: 192 QELDLSYNEIGSLTDRTFSSLPHLAVLNLRGN 223
             LDLSYN +G +   TF  +P LA LNL  N
Sbjct: 397 SWLDLSYNRLGQIDAGTFKGIPRLASLNLGHN 428



 Score = 66.1 bits (154), Expect = 5e-13
 Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 10/136 (7%)

Query: 78  RLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLRLSRNYLSEL 137
           +L L  NK+ N  +D F  M +L  LDLS N + E         K L  L  S N +SE+
Sbjct: 252 QLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHNRISEI 311

Query: 138 P----KFQSNSLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSNQIESIP----DNFSSN 189
           P    +F  N LR +  S+  + +L  D+L   T L  +D+S N +  +P       S+ 
Sbjct: 312 PNDLFRFLGN-LRIVDFSHNRLRSLP-DNLFRETGLERLDVSHNLLGKLPLTSLSLASAQ 369

Query: 190 TLQELDLSYNEIGSLT 205
           TL ELDLS+N I SL+
Sbjct: 370 TLSELDLSWNSISSLS 385



 Score = 58.4 bits (135), Expect = 9e-11
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 7/147 (4%)

Query: 84  NKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLRLSRNYLSELPK--FQ 141
           + ++N   D+   +  L  LDLS NR+           +SL  + L  N +  + +  FQ
Sbjct: 28  SSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQ 87

Query: 142 SN---SLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSNQIESIPDNFSSN--TLQELDL 196
            +    L  ++ S+  + N+Q  + +++  L +I L  N+IES+      N  +L+ L+L
Sbjct: 88  GDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNL 147

Query: 197 SYNEIGSLTDRTFSSLPHLAVLNLRGN 223
             N+I ++   TF +LP L  L+L  N
Sbjct: 148 KGNKIATIAYETFQNLPELEDLDLAYN 174



 Score = 50.4 bits (115), Expect = 2e-08
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%)

Query: 77  RRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLRLSRNYLSE 136
           +RL+L  NKI  I  ++F  +  L  LDL+ N I+     +     SL    ++ ++   
Sbjct: 143 KRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSLGMFHVNMSH--- 199

Query: 137 LPKFQSNSLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSNQIESIPDNF---SSNTLQE 193
                 N L +L ++   +   Q   L  + ++  +DLS N I S+   F      +L +
Sbjct: 200 ------NKLINLVVAPS-VPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFFRPVELSLMQ 252

Query: 194 LDLSYNEIGSLTDRTFSSLPHLAVLNLRGNEFREV 228
           L L +N++ + T   F ++PHL VL+L  N   E+
Sbjct: 253 LYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYEL 287



 Score = 49.2 bits (112), Expect = 6e-08
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 7/153 (4%)

Query: 75  KFRRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTA--AKSLNTLRLSRN 132
           +   LDLS N+++N+ ++SF  + +L  + L +N I             + L  +  S N
Sbjct: 43  RLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQGDIHRDLTEVYFSFN 102

Query: 133 YLSELPKF---QSNSLRSLHLSYCLITNLQVDSLSEMTSLLEIDLSSNQIESIPDNFSSN 189
            +  + +        L  +HL    I +L+  +   + SL  ++L  N+I +I      N
Sbjct: 103 SVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQN 162

Query: 190 --TLQELDLSYNEIGSLTDRTFSSLPHLAVLNL 220
              L++LDL+YN I SL    F  +  L + ++
Sbjct: 163 LPELEDLDLAYNSISSLDFNIFDQVGSLGMFHV 195



 Score = 48.8 bits (111), Expect = 7e-08
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 21/217 (9%)

Query: 14  NNNFATFPSQ-LESFSRVQVLDLSGNHL-NVPLPSY--IENWXXXXXXXXXXXXYESWLN 69
           +++   FPS  ++  +R++ LDLS N L NVP  S+  + +                   
Sbjct: 27  SSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTF 86

Query: 70  DGRQYK-FRRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFSPKLLTAAKSLNTLR 128
            G  ++    +  S N ++N+++ +F+ +  L  + L +NRI     +     KSL  L 
Sbjct: 87  QGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLN 146

Query: 129 LSRNYLSEL--PKFQS-NSLRSLHLSYCLITNLQVDSLSEMTSL--LEIDLSSNQI---- 179
           L  N ++ +    FQ+   L  L L+Y  I++L  +   ++ SL    +++S N++    
Sbjct: 147 LKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSLGMFHVNMSHNKLINLV 206

Query: 180 --ESIPDNFSS-----NTLQELDLSYNEIGSLTDRTF 209
              S+P    +       ++ LDLS+N I S+  + F
Sbjct: 207 VAPSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFF 243



 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 8/155 (5%)

Query: 110 INEFSPKLLTAAKSLNTLRLSRNYLSELPKFQSNSLRSL---HLSYCLITNLQVDSLSE- 165
           +  F    +     L  L LS N L  +P    + LRSL   HL    I  +   +    
Sbjct: 30  VQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQGD 89

Query: 166 -MTSLLEIDLSSNQIESIPDNFSSNTLQ--ELDLSYNEIGSLTDRTFSSLPHLAVLNLRG 222
               L E+  S N + ++  +  ++ +Q  ++ L  N I SL  R F +L  L  LNL+G
Sbjct: 90  IHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKG 149

Query: 223 NEFREVWSTSHFASNPFLREVHVKGNRWNCEGFSV 257
           N+   + +   F + P L ++ +  N  +   F++
Sbjct: 150 NKIATI-AYETFQNLPELEDLDLAYNSISSLDFNI 183



 Score = 40.3 bits (90), Expect = 3e-05
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 8/114 (7%)

Query: 143 NSLRSLHLSYCL---ITNLQVDSLSEMTSLLEIDLSSNQIESIPDN--FSSNTLQELDLS 197
           +SL +L L++ L   + N   D++  +  L E+DLS+N++ ++PDN      +L+++ L 
Sbjct: 15  DSLLTLKLTHALSSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQ 74

Query: 198 YNEIGSLTDRTFSSLPH--LAVLNLRGNEFREVWSTSHFASNPFLREVHVKGNR 249
            N I  +   TF    H  L  +    N  R V   + FA    L ++H+  NR
Sbjct: 75  DNTIEMIHRGTFQGDIHRDLTEVYFSFNSVRNVQQHT-FADLIQLEQIHLDDNR 127


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 333 IIAINKPDPPRPETETTIVNLNG--TPQSRAESVVMRVPLRDE 373
           IIA   P PP+PE   T  +LNG  TP +        VP  +E
Sbjct: 170 IIACMGP-PPQPEPPVTFNSLNGAHTPLTDDHDEKYGVPTLEE 211


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 72  RQYKFRRLDLSRNKI-KNIEEDSFSGMTNLYFL---DLSENRINEFSPKLLTAAKSLNTL 127
           R+Y  +  D ++N   KN   +  + + +LY     D   + IN  + + L +A  +NT+
Sbjct: 332 RKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSLGPDSVYSFINNLTDRKLLSAWYMNTV 391

Query: 128 RLSRNYLSELPKFQSNSLRSLH 149
              +N    LPK  S+  R L+
Sbjct: 392 LGHQNPYLALPKTDSSDNRILN 413


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 72  RQYKFRRLDLSRNKI-KNIEEDSFSGMTNLYFL---DLSENRINEFSPKLLTAAKSLNTL 127
           R+Y  +  D ++N   KN   +  + + +LY     D   + IN  + + L +A  +NT+
Sbjct: 224 RKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSLGPDSVYSFINNLTDRKLLSAWYMNTV 283

Query: 128 RLSRNYLSELPKFQSNSLRSLH 149
              +N    LPK  S+  R L+
Sbjct: 284 LGHQNPYLALPKTDSSDNRILN 305


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 14  NNNFATFPSQLESFSRVQVLDLSGNHLNVPLPSYIE 49
           NN F      L +FS  Q+L +   HL   +  + E
Sbjct: 155 NNEFYAMGRSLTTFSAFQILKIFLAHLVPKIAEFFE 190


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,287
Number of Sequences: 317
Number of extensions: 4006
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 15
length of query: 438
length of database: 114,650
effective HSP length: 59
effective length of query: 379
effective length of database: 95,947
effective search space: 36363913
effective search space used: 36363913
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)