Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002615-TA|BGIBMGA002615-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (666 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    37   5e-04
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    36   0.001
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    30   0.053
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              29   0.16 
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        26   1.1  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    25   1.5  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    25   2.0  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    25   2.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   2.0  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   2.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   8.0  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 37.1 bits (82), Expect = 5e-04
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 12/95 (12%)

Query: 253 QKTRMRTSFDPELELPKLQRWFAENQHPSRQQIQQYVRELNNLESRRGRKPLDVNNVVYW 312
           ++ R RT+F  E +L +L+R FAEN++ + ++ QQ  R+L   E++          +  W
Sbjct: 19  EEKRPRTAFSAE-QLARLKREFAENRYLTERRRQQLSRDLGLTEAQ----------IKIW 67

Query: 313 FKNARAAQKRAELRNIGGLSCHLGVNGFNSRSHSP 347
           F+N RA  K+A  +    L+  L   G  + S  P
Sbjct: 68  FQNKRAKIKKASGQK-NPLALQLMAQGLYNHSTVP 101



 Score = 25.4 bits (53), Expect = 1.5
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 602 KYTEELNRMPYRQKFPRLESKNVQFWFKNRRAKCKR 637
           +Y  E  R    +     E++ ++ WF+N+RAK K+
Sbjct: 43  RYLTERRRQQLSRDLGLTEAQ-IKIWFQNKRAKIKK 77


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)

Query: 253 QKTRMRTSFDPELELPKLQRWFAENQHPSRQQIQQYVRELNNLESRRGRKPLDVNNVVYW 312
           ++ R RT+F  E +L +L+R FAEN++ + ++ QQ  R+L           L+   +  W
Sbjct: 19  EEKRPRTAFSGE-QLARLKREFAENRYLTERRRQQLSRDLG----------LNEAQIKIW 67

Query: 313 FKNARAAQKRAELRNIGGLSCHLGVNGFNSRSHSP 347
           F+N RA  K+A  +    L+  L   G  + S  P
Sbjct: 68  FQNKRAKIKKASGQK-NPLALQLMAQGLYNHSTVP 101



 Score = 25.4 bits (53), Expect = 1.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 619 LESKNVQFWFKNRRAKCKR 637
           L    ++ WF+N+RAK K+
Sbjct: 59  LNEAQIKIWFQNKRAKIKK 77


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 30.3 bits (65), Expect = 0.053
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 619 LESKNVQFWFKNRRAKCKRLK 639
           L    V+ WF+NRRAK KRL+
Sbjct: 48  LTETQVKIWFQNRRAKAKRLQ 68


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 28.7 bits (61), Expect = 0.16
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 30 NRKTLPVHCVVEAVSSLEESNWRRRAIVETDSYVIIPAATAF 71
          N+K LP  CV    +  EE+ +R+  + + D  V  P   A+
Sbjct: 32 NKKPLPTECVFCRNNGEEEAYYRKHLLKDADGRVSCPVLRAY 73


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 619 LESKNVQFWFKNRRAKCKRL 638
           L    V+ WF+NRR+K K++
Sbjct: 20  LTQTQVKIWFQNRRSKYKKM 39


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 619 LESKNVQFWFKNRRAKCKR 637
           L  + ++ WF+NRR K K+
Sbjct: 47  LTERQIKIWFQNRRMKLKK 65


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 619 LESKNVQFWFKNRRAKCKR 637
           L  + ++ WF+NRR K K+
Sbjct: 47  LTERQIKIWFQNRRMKWKK 65


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 619 LESKNVQFWFKNRRAKCKR 637
           L  + ++ WF+NRR K K+
Sbjct: 47  LTERQIKIWFQNRRMKWKK 65


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 619 LESKNVQFWFKNRRAKCKR 637
           L  + ++ WF+NRR K K+
Sbjct: 309 LTERQIKIWFQNRRMKWKK 327


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 619 LESKNVQFWFKNRRAKCKR 637
           L    V+ WF+NRR K K+
Sbjct: 47  LTETQVKIWFQNRRTKWKK 65


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 175  QICRGQDRTPGPHNFHEPSED 195
            Q+CR   RTP P    + SED
Sbjct: 1331 QLCRNSRRTPVPRLAQDSSED 1351



 Score = 23.4 bits (48), Expect = 6.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 244  QTVQSQYPTQKTRMRTSFDPELELPKLQRWFAENQHPSRQQIQQ 287
            Q  Q Q P Q+ + +    P+ +  + Q+   + Q   +QQ QQ
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQ 1541


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 174 AQICRGQDRTPGPHN 188
           AQI R + RTP PH+
Sbjct: 174 AQIRRNERRTPDPHD 188


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,377
Number of Sequences: 429
Number of extensions: 7536
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 15
length of query: 666
length of database: 140,377
effective HSP length: 62
effective length of query: 604
effective length of database: 113,779
effective search space: 68722516
effective search space used: 68722516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)