Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002615-TA|BGIBMGA002615-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 36 0.018
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 33 0.096
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 33 0.17
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 32 0.29
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 31 0.68
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 30 0.90
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 30 1.2
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 29 1.6
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 29 1.6
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 1.6
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 3.6
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 28 4.8
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 28 4.8
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 28 4.8
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 27 6.3
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 27 8.4
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 35.9 bits (79), Expect = 0.018
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 340 FNSRSHSPSNGSLMVSNDHYGPQDQNSMKSPMQLSESPGRYPMSVLSEDNLSNGGSDLDE 399
+ SRS SP S D P+ + +SP +S +P + P+ +E N+ NG + + E
Sbjct: 143 YRSRSRSPDGRSRSPDYDRRSPKRNH--RSPSPVSFAPQKSPVENETETNVDNGDTKISE 200
Query: 400 DVGDMNQDDRPESPDAPLSLITTKKNNNNSDELHQ-ESPKPPDIIKVHDIKQEPKDLSKT 458
+ E AP S + NN + + Q ES + P + ++ QE + ++
Sbjct: 201 --SNEKSGTEVEQQSAPNS--NGNEEVNNLEPVGQNESKQEPPKEENSNVSQEQPEQAQP 256
Query: 459 E 459
E
Sbjct: 257 E 257
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 33.5 bits (73), Expect = 0.096
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 421 TTKKNNNNSDELHQESPKP------PDIIKVHDIKQEPKDLSKTEQIISPQRSP 468
TTK NN D+ +E P P PD++K+ + + ++++K +Q+I+ R+P
Sbjct: 150 TTKPENNEKDDFEEEPPLPKHKISVPDVLKLW-LVDDWENITKNQQLIAIPRNP 202
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 32.7 bits (71), Expect = 0.17
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 346 SPSNGSLMVSNDHYGPQDQNSMKSPMQLSESP--GRYPMSVLSEDNLSNGGSDLDEDVGD 403
S SN + S++ ++ + P+QLS + M ++ ++S GSD
Sbjct: 289 SSSNNYMQTSSELTSSTEKMNGSHPLQLSNKSLLSIHLMQSKNQGHVSMTGSD------K 342
Query: 404 MNQDDRPESPDAPLSLITTKKNNNNSDELHQESPK-PPDIIKVHDIKQEPKDLSKTEQII 462
++ + E+ +AP+S +K N DE +S K P + + V ++ QEPK + E +
Sbjct: 343 LSSHVQSETENAPVSK-PSKPNTLTEDEKPLQSTKLPGNSLTVGELYQEPKSIQLPELSV 401
Query: 463 S 463
S
Sbjct: 402 S 402
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 31.9 bits (69), Expect = 0.29
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 396 DLDEDVGDMNQDDRPESPDAPLSLITTKKNNNNSDELHQESPKPPDIIKVHDIKQEPKDL 455
+ DE+ D Q+ +P+ PDAP +N NS +L SP P+I+K + EP +
Sbjct: 78 EFDENKVDWKQE-KPK-PDAPSFADNNSFDNVNSSKLTNPSPVQPNIVK---SESEPANS 132
Query: 456 SKTEQIISPQRSPAK 470
+ E + + AK
Sbjct: 133 KQNEVVEATSVEKAK 147
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 599 LILKYTEELNRMP-YRQKFPR---LESKNVQFWFKNRRAKCK 636
L+ +++++ N P R+K R + ++V WF+NRRAK K
Sbjct: 181 LLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAKSK 222
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 30.7 bits (66), Expect = 0.68
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 390 LSNGGSDLDEDVGDMNQDDRPES---PDAPLSLITTKKNNNNSDELHQESPKPPDI 442
LS+G LDED GD+ QD P + P +P+++ +++ S K PDI
Sbjct: 51 LSDGSIHLDEDNGDIEQDMPPVTRLQPTSPMAVNAASDEASHASS-SDSSDKNPDI 105
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 30.3 bits (65), Expect = 0.90
Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 12/208 (5%)
Query: 262 DPELELPKLQRWFAENQHPSRQQIQQYVRELNNLESRRGRKPLDVNNVVYWFKNARAAQK 321
D ++ KLQ E + Q ++ +LES+ G + D+NN + R +
Sbjct: 49 DKTIQFQKLQMTAKEIIDAFERDSTQRTLQIESLESKIGEQERDLNNEKLASETLREKTQ 108
Query: 322 RAELRNIGGLSCHLGVNGFNSRSHSPSNGSLMVSNDHYGPQ-DQNSMK------SPMQLS 374
E N G L G SR L + Y + +++S++ S +L
Sbjct: 109 LLEKEN-GALKVENGYLYEKSRKLEEEMAHLKKKCNVYKSKFEESSLRCKSLYSSNTKLK 167
Query: 375 ESPGRYPMSVLSEDNLSNGGSDLDEDVGD-MNQDDRPESPDAPLSLITTKKNNNNSD--E 431
+S + +E N ++ D ++ + S +PL + + N+N+
Sbjct: 168 DSMETMKRRMETETKEMNKIKPKNDSESDRFKRNSQSLSQQSPLLDVHSPDNSNHRTMLN 227
Query: 432 LHQESP-KPPDIIKVHDIKQEPKDLSKT 458
++ SP KP I K +++K L KT
Sbjct: 228 INNSSPIKPKKIFKPNEVKNRISRLQKT 255
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 228 RSPTLN-SIPDHL-HPALQTVQSQYPTQKTRMRTSFDPELELPKLQRWFA--ENQHPSRQ 283
+SP L+ PD+ H + + + P + ++ + + + +LQ+ FA ENQH S Q
Sbjct: 208 QSPLLDVHSPDNSNHRTMLNINNSSPIKPKKIFKPNEVKNRISRLQKTFADLENQHHSFQ 267
Query: 284 QIQQYVRE 291
QI Q +R+
Sbjct: 268 QICQTLRK 275
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 29.9 bits (64), Expect = 1.2
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 344 SHSPSNGSLMVSNDHYGPQDQNSMKSPMQLSESPGRYPMSVLSEDNLS-NGGSDLDE-DV 401
S S GS Y PQ +N ++ + ++ S ++EDN S N G D D DV
Sbjct: 425 SSSSVTGSGASGRKVYTPQSKNPFPISQGVTGTSSKFSASEVTEDNGSPNAGLDADNVDV 484
Query: 402 GDMNQDDRPESPDAPLSLITTKKNNNNSDELHQESPKPPDIIKVHD 447
++ P+ + S +T+ N S +P+ +I K+ D
Sbjct: 485 EEVVNQRYPDLNELE-SQLTSHTNITTSS---HHNPREQEIAKLAD 526
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 568 RRKRNRTFIDPVSEVPVLEQWFSMNTHPSHNLILKYTEELNRMPYRQKFPRLESKNVQFW 627
++KR R D +E +LEQ+F PS L +EL++ PR +Q W
Sbjct: 33 QKKRRRRTTD--AEATLLEQYFLKTPKPS----LIERQELSKKLKSSMTPR----ELQIW 82
Query: 628 FKNRRAKCKR 637
F+N+R +R
Sbjct: 83 FQNKRQSLRR 92
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 409 RPESPDAPLSLITTKKNNNNSDELHQ-ESPKPPDIIKVHDIKQEP 452
R P + S +T + +N + DE H + P P + K+H+ +Q+P
Sbjct: 444 RRRRPQSTASFVTYRSDNGSVDEYHDAQLPDPNTLSKLHE-EQDP 487
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 338 NGFNSRSHSPSNGSLMVSNDHYGPQD----QNSMKS---PMQLSE--SPGRYPMSVLSED 388
N + +S P+N +V ++ + QD N KS P+Q + SP + +
Sbjct: 17 NSIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYKSNDEPVQSQDPISPNMASNESGNSE 76
Query: 389 NLSNGGSDLDEDV 401
N SN GS DE+V
Sbjct: 77 NTSNYGSSRDENV 89
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 334 HLGVNGFNSRSHSPSNGSLMVSNDHYGPQDQNSMKSPMQLSESPGRYPMSVLSEDNLSNG 393
HL + +N++S + N + ND P + K + S S + + N
Sbjct: 14 HLNLEAYNAKSRAIENEKRYLGNDRNLPFHREREKVESNPNSSDEEDLTSTNNTRSSDNT 73
Query: 394 GSDLDEDVGDMNQDDRPESPDAPLS 418
SD ++D G+ + ES PL+
Sbjct: 74 TSDTEDDSGEDSYQVEWESGKDPLA 98
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/67 (29%), Positives = 26/67 (38%)
Query: 262 DPELELPKLQRWFAENQHPSRQQIQQYVRELNNLESRRGRKPLDVNNVVYWFKNARAAQK 321
DP L+ PK Q A + Y E+NNL RR D NNV + A
Sbjct: 516 DPTLKDPKHQDLVAAANAYMAMLRESYGTEINNLLERRNELLDDYNNVQKILNESLEASV 575
Query: 322 RAELRNI 328
+N+
Sbjct: 576 HLNTKNL 582
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 239 LHPALQTVQSQYPTQKTRMRTSFDPELELPKLQ---RWFAENQHPSRQQ 284
L AL+T + P K +++ ++ PE +L KLQ +W E H +R Q
Sbjct: 457 LRLALET-KKDLPGTKVQLKPAYSPEGKLLKLQLIIKWGGEFTHSARYQ 504
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 492 IEDHESDEESPQERLYRPSSSPQ 514
++D ++D+ESP++RL SSS Q
Sbjct: 809 VDDQQADDESPKKRLSIDSSSAQ 831
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 387 EDNLSNGGSDLDEDVGDMNQDDRPESPD--APLSLITTKKNNNN--SDELHQESPKPPDI 442
ED++ G + D D+N+ PES + AP + + +K N + S E Q +P+
Sbjct: 60 EDDIDWGDMENDTISTDVNKPAEPESKETSAPAAAVEIEKENESIISKETSQ-APETSTG 118
Query: 443 IKVHDIKQEPKDLSKTEQIISP 464
+ H E S + ++ SP
Sbjct: 119 AEEHQETTEESKQSVSNEVSSP 140
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 250 YPTQKTRMRTSFDPELELPKLQR--WFAENQHPSRQQIQQYVRELNN--------LESRR 299
Y ++ + + P+ E P + + +F H QQ+ Q +++LNN + S
Sbjct: 190 YSSKVSELLRKLSPDNEKPPIVQKIYFTSRTHSQLQQLVQEIKKLNNQTFSTPIRVVSLA 249
Query: 300 GRKPLDVNNVV 310
RK L +NN V
Sbjct: 250 SRKNLCINNEV 260
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,450
Number of Sequences: 5004
Number of extensions: 117566
Number of successful extensions: 373
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 22
length of query: 666
length of database: 2,362,478
effective HSP length: 77
effective length of query: 589
effective length of database: 1,977,170
effective search space: 1164553130
effective search space used: 1164553130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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