GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002614-TA|BGIBMGA002614-PA|undefined
         (53 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    24   2.1  

>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 19  TVKSEVPSDLSQDKPDRNKLKLWITDQRIHGAPIT 53
           T +  +P DL +D+ DR   KL + D      P++
Sbjct: 114 TERKTIPDDLVEDEVDRFYNKLGLDDYYFQMEPVS 148


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.129    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,225
Number of Sequences: 5004
Number of extensions: 3884
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 1
length of query: 53
length of database: 2,362,478
effective HSP length: 34
effective length of query: 19
effective length of database: 2,192,342
effective search space: 41654498
effective search space used: 41654498
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)