GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002614-TA|BGIBMGA002614-PA|undefined
         (53 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0147 - 14095039-14095937,14096914-14097379                       27   1.4  
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767...    25   7.5  
01_05_0481 + 22610251-22610430,22610864-22610881                       25   9.9  

>11_04_0147 - 14095039-14095937,14096914-14097379
          Length = 454

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 22  SEVPSDLSQDKPDRNKLKLWITDQRIHGAP 51
           SE+PSDL ++   R ++  W   +++ G P
Sbjct: 310 SELPSDLQEEINGRGRIVSWAPQEKVLGHP 339


>11_02_0042 -
           7672565-7672729,7672902-7672977,7673409-7674132,
           7674684-7674708,7675041-7675486,7676643-7676862,
           7677609-7678459,7678697-7679555
          Length = 1121

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 20  VKSEVPSDLSQDKPDRNKLKLWITDQRIHGAPIT 53
           V+   P  L+Q +P+RN++   I+ ++ H  P T
Sbjct: 951 VEKHAPGILNQMRPERNQVVPRISGEQYHRMPET 984


>01_05_0481 + 22610251-22610430,22610864-22610881
          Length = 65

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 38 LKLWITDQRIHGAPIT 53
          L+ W++D+R HG  IT
Sbjct: 15 LRSWVSDERAHGQNIT 30


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.129    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,179
Number of Sequences: 37544
Number of extensions: 22671
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 3
length of query: 53
length of database: 14,793,348
effective HSP length: 34
effective length of query: 19
effective length of database: 13,516,852
effective search space: 256820188
effective search space used: 256820188
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)