GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002613-TA|BGIBMGA002613-PA|undefined
         (115 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.25 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   3.0  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   4.0  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    24   5.3  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    24   5.3  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    24   5.3  
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr...    23   9.2  
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.2  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    23   9.2  

>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 28.7 bits (61), Expect = 0.25
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 9   VSRITKEGEVAASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHVKHL 68
           +    +E E  A+TS + +   ASN   Q A   +    E+ +  T  +  K  E  +H+
Sbjct: 70  IEEANEENESVAATSNERQQHDASNQPSQAAQTTINKNTESATPKTVNEINKSQEFQEHV 129

Query: 69  E 69
           E
Sbjct: 130 E 130


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 2   TGMSEKTVSRITKEGEVAASTSQKLKSRVASNNVGQEA 39
           TG ++KT  +  K+G+ A ST +K +  +  +   QE+
Sbjct: 476 TGPAKKTPVQRRKDGKFAKSTKRKKQKSLKPDTENQES 513


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
          subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 41 NIVKLTEEAFSSITPQDWQKQCEHVKH 67
          NI+  T +  + ITP+ ++K  + +KH
Sbjct: 67 NIITTTPKHQTVITPKSYRKSVKRIKH 93


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 484

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 63 EHVKHLEDKFYERDGCMDNITDKFIIEL 90
          +H+  LE++F      +  +TD+F+ EL
Sbjct: 29 DHLDELEEQFTIPTELLHRVTDRFVSEL 56


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 45  LTEEAFSSITPQDW-QKQCEHV 65
           ++ EA   +TPQ+W QK C  +
Sbjct: 900 VSPEAMKKLTPQEWSQKVCHSI 921


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 1   MTGMSEKTVSRITKEGEVAASTSQKLKSRVASNNVGQEA 39
           +TG+ E  ++R  +E   A +  Q+    +A  + GQ A
Sbjct: 183 LTGIPEDILNRQREESAAALAAQQQQSEALAPTSTGQPA 221


>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 56  QDWQKQCEHVKHLEDKF 72
           Q+W+KQ  +VK  +D F
Sbjct: 84  QEWEKQSANVKIFQDTF 100


>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 117

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 4  MSEKTVSRITKEGEVAASTSQKLKSRVASNNVGQE 38
          +++ T S  +KE  +A ++ +++ S   S+NVG E
Sbjct: 41 VNDLTKSSSSKEEGIADNSLKEVSSSEVSDNVGME 75


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 23  SQKLKSRVASNNVGQEAGNIVKLTEEAFSS 52
           ++ LKS+VASN V Q + N  K +  A +S
Sbjct: 700 NENLKSKVASNPVSQTSTN-AKASTPALAS 728


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,045
Number of Sequences: 5004
Number of extensions: 13271
Number of successful extensions: 45
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 9
length of query: 115
length of database: 2,362,478
effective HSP length: 64
effective length of query: 51
effective length of database: 2,042,222
effective search space: 104153322
effective search space used: 104153322
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)