Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002613-TA|BGIBMGA002613-PA|undefined
(115 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 31 0.30
02_01_0517 + 3733921-3735012 30 0.52
01_01_1181 + 9410310-9411329 29 1.2
10_05_0090 - 9071438-9072346,9072497-9072535 28 1.6
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 27 2.8
05_01_0575 + 5112988-5114082 27 2.8
03_05_0259 + 22444269-22444297,22444818-22445536,22445588-224459... 27 2.8
11_06_0592 - 25327128-25329566 27 3.6
08_02_1261 + 25689487-25689666,25690642-25690887,25691032-256911... 27 3.6
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 27 3.6
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 27 4.8
05_01_0368 + 2892476-2893465 27 4.8
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 27 4.8
10_01_0189 + 2097918-2098191,2101711-2102747 26 6.4
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 26 6.4
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540... 26 6.4
05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,536... 26 8.4
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 26 8.4
03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402 26 8.4
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 30.7 bits (66), Expect = 0.30
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 56 QDWQKQCEHVKHLEDKFYERDGCMDNIT 83
QDW K ++ + + +DGC+ NIT
Sbjct: 819 QDWDKISSSLEEMRQSLFRKDGCLVNIT 846
>02_01_0517 + 3733921-3735012
Length = 363
Score = 29.9 bits (64), Expect = 0.52
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 14 KEGEVAASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHVKHLEDKFY 73
K G S K K + + G +G K + F T W + C KHL + +
Sbjct: 231 KNGGKVNKMSFKKKGNHSKSKKGSTSGEYGKQDQVCFKCGTRGHWSRICRTPKHLIELYQ 290
Query: 74 ERDG 77
E+ G
Sbjct: 291 EKHG 294
>01_01_1181 + 9410310-9411329
Length = 339
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 16 GEVAASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHVKHLEDKFYER 75
G+V + +K ++ + + G +G K + F T W + C KHL + + E+
Sbjct: 209 GKVNKMSFKKKGNQNSKSKKGSTSGEYGKQDQVCFKCGTRGHWSRICRTPKHLIELYQEK 268
Query: 76 DG 77
G
Sbjct: 269 HG 270
>10_05_0090 - 9071438-9072346,9072497-9072535
Length = 315
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 16 GEVAASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHVKHLEDKFYER 75
G+V ++ +K ++ + + G +G K + T W + C KHL + + E+
Sbjct: 185 GKVNKTSFKKKGNQNSKSKKGSTSGEYGKQDQVCVKCGTRGHWSRICRTPKHLIELYQEK 244
Query: 76 DGCMDNITDK-FIIELRN 92
G + + F +E++N
Sbjct: 245 HGKKKSEHESHFTVEIQN 262
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 16 GEVAASTSQKLKSRVASNNVGQEAG 40
G++AAS +++LK +++ N G++ G
Sbjct: 710 GQIAASAAEELKDKLSENKEGKKVG 734
>05_01_0575 + 5112988-5114082
Length = 364
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 16 GEVAASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHVKHLEDKFYER 75
G+V ++ +K ++ + + G +G K + F T W + C KHL + + E+
Sbjct: 234 GKVNKTSFKKKGNQNSKSKKGSTSGEYGKQDQVCFKCGTRGHWSRICRTPKHLIELYQEK 293
>03_05_0259 +
22444269-22444297,22444818-22445536,22445588-22445937,
22449455-22449757
Length = 466
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 44 KLTEEAFSSITPQDWQKQCEH 64
KL F PQDW+ +CEH
Sbjct: 208 KLDFPIFDGSDPQDWRMKCEH 228
>11_06_0592 - 25327128-25329566
Length = 812
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 26 LKSRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHVKHLEDKFYERD 76
LK +A NN+ + G K E + + P K+ E ++H+ K + D
Sbjct: 497 LKHLLAGNNINTDGGGEGKKNESGSTVLVPHRIGKKTETLRHVRIKDGQAD 547
>08_02_1261 +
25689487-25689666,25690642-25690887,25691032-25691128,
25691233-25691630,25692013-25692267
Length = 391
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 19 AASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHVKHLED 70
A S LK+ V N G V + E +I +DW++ + + +ED
Sbjct: 291 AESAIADLKTPVVRNQEGVSPSESVVVWGEVSDAILKKDWERSSQAKRRVED 342
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 10 SRITKEGEVAASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHV-KHL 68
SR KE + A + + + +N GNIV L FS++ P +W + V KHL
Sbjct: 1373 SRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNL-PHEWLESTHTVIKHL 1431
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 27 KSRVASNNVGQEAGNIVKLTEEAFS-SITPQDWQKQCEHVKHLED 70
KS + N+G +G+I+ LT F+ S P +K E +K+LE+
Sbjct: 354 KSELLLENIGSTSGSILMLTTMKFNDSDDPVAAEKAGEVLKNLEN 398
>05_01_0368 + 2892476-2893465
Length = 329
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 42 IVKLTEEAFSSITPQDWQKQCEH 64
+ KL F PQDW +CEH
Sbjct: 176 VPKLDFPKFDGSDPQDWLMRCEH 198
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 5 SEKTVSRITKEGEVAASTSQKLKSRVASNNV 35
S+ V+++ E EVA QK+K VASN+V
Sbjct: 212 SDGKVAQLETELEVARDDLQKMKEIVASNDV 242
>10_01_0189 + 2097918-2098191,2101711-2102747
Length = 436
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 34 NVGQ--EAGNIVK--LTEEAFSSITPQDWQKQCEHVKHL 68
N+GQ E GN+ L E FS + DW+K HV +L
Sbjct: 192 NLGQITENGNLSARTLVIEFFSDVDDNDWKKFYSHVTNL 230
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 19 AASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSITP 55
AA+ + V +NN+G ++GN L SS+ P
Sbjct: 432 AAAGQSTINDNVTNNNIGLKSGNNASLNINNKSSLKP 468
>01_05_0636 +
23852985-23853142,23853253-23853445,23853910-23854033,
23854285-23854637,23855525-23856530,23856892-23857085,
23857238-23857324
Length = 704
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 3 GMSEKTVSRITKEGEVAASTSQ----KLKSRVASNNVGQEAGNIVKLTEEAFSSITPQDW 58
G S SR+T GEV+ S+ +KS +++ +GQ + L E S D
Sbjct: 523 GGSHSDTSRVTSTGEVSNEESETGHAAIKSHTSTDELGQHGSDPKSLPVE--DSSNAHDL 580
Query: 59 QKQC 62
K C
Sbjct: 581 AKTC 584
>05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,
5369636-5369748,5369824-5369916,5370081-5370244,
5370328-5370564,5370739-5370883,5370982-5371160,
5371997-5372142,5372239-5372366,5372441-5372614,
5372706-5372735,5373219-5373380,5373460-5373705,
5373733-5373870,5373974-5374174,5374304-5374448,
5374575-5374681,5374830-5374970,5375274-5375539,
5375621-5375745,5375843-5376109,5376250-5376263
Length = 1174
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 28 SRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHVKHLEDKFYERDGCMDNITDK 85
S++ S+++ ++ K T++ ++ P W+ V+HL DK + + + +K
Sbjct: 1030 SKLPSSDIPDILIDVQKRTQDTNTNEDPSAWRPYFTFVEHLRDKHAKNEVLQEEKEEK 1087
>04_01_0568 -
7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 17 EVAASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSITPQDWQKQCEHVKHLEDKFY 73
E + T+ KS V SN+ + G V ++EA SS ++ +K+ V K Y
Sbjct: 885 EYSQDTTVPAKSPVKSNSSNENGGTSVAPSKEAGSSKLIEEEEKESGRVSWQVYKLY 941
>03_05_0036 +
20094462-20095296,20111755-20111822,20112265-20112402
Length = 346
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 10 SRITKEGEVAASTSQKLKSRVASNNVGQEAGNIVKLTEE 48
SR++ EG A ++ + + AS+++GQ++G+ EE
Sbjct: 13 SRVSGEGSSAPTSKVRRGNPTASSDLGQDSGSHAPSFEE 51
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.127 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,707
Number of Sequences: 37544
Number of extensions: 76260
Number of successful extensions: 188
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 19
length of query: 115
length of database: 14,793,348
effective HSP length: 73
effective length of query: 42
effective length of database: 12,052,636
effective search space: 506210712
effective search space used: 506210712
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -