GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002613-TA|BGIBMGA002613-PA|undefined
         (115 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   0.68 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   0.68 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   1.6  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 0.68
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 5  SEKTVSRITKEGEVAASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSIT 54
          S+KT+ RI KE  V  +    +  +   +NV     NI K+ +     IT
Sbjct: 25 SKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEKIT 74


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 23.4 bits (48), Expect = 0.68
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 5  SEKTVSRITKEGEVAASTSQKLKSRVASNNVGQEAGNIVKLTEEAFSSIT 54
          S+KT+ RI KE  V  +    +  +   +NV     NI K+ +     IT
Sbjct: 8  SKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEKIT 57


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 41  NIVKLTEEAFSSITPQDWQKQCEHVKHLEDKFYE 74
           N++ + +           Q+  +  K L+DK+YE
Sbjct: 374 NVLAIVDRLMDETNQLTLQETADAFKDLQDKYYE 407


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,434
Number of Sequences: 429
Number of extensions: 842
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 115
length of database: 140,377
effective HSP length: 50
effective length of query: 65
effective length of database: 118,927
effective search space:  7730255
effective search space used:  7730255
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)