GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002612-TA|BGIBMGA002612-PA|undefined
         (275 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631...    34   0.14 

>04_03_0926 -
           20861383-20862198,20862359-20862430,20862938-20863123,
           20863214-20863304,20863698-20863852,20864501-20864579,
           20866797-20867263
          Length = 621

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 124 PVTPAPVRDPLLEADREAERKYREL-IREADKLLVTVSRAPLEPPHNPRVRELRATEVEV 182
           P  PA       +A+ EA RK REL    ADK L  V+ +P      P   E+ A EVEV
Sbjct: 37  PPPPAEEGVAAADAEGEARRKQRELRAAAADKRLRAVAPSPAAAAPRPPAPEVVAREVEV 96


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,570,139
Number of Sequences: 37544
Number of extensions: 122569
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 1
length of query: 275
length of database: 14,793,348
effective HSP length: 81
effective length of query: 194
effective length of database: 11,752,284
effective search space: 2279943096
effective search space used: 2279943096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)