GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002612-TA|BGIBMGA002612-PA|undefined
         (275 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   1.8  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    25   3.1  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 135  LEADREAERKYRELIREADKLLVTVSRA-------PLEPPHNPRVRELRATEVEVPRRSP 187
            LEA R   R+ R   R A++   T  R        P  PP +PR  + RA   E   R  
Sbjct: 1096 LEAQRAEVRRARNERRNANRRAATARRREERRAGLPPTPPASPRTAQRRAALRERQARFR 1155

Query: 188  ER 189
            ER
Sbjct: 1156 ER 1157


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 140 EAERKYRELIREADKLLVTVSRAPLEPPHNPRVRELRATEVEVPRRSPERTHLT 193
           E ERK   + RE  K  V +   P   P  P  RE+   E ++ +   E   L+
Sbjct: 60  EMERKIGYIRREIVKDSVAIPDMPEVIPRTPNSREIIDLEAQLEKTENEIVELS 113


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,505
Number of Sequences: 2123
Number of extensions: 3935
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 275
length of database: 516,269
effective HSP length: 63
effective length of query: 212
effective length of database: 382,520
effective search space: 81094240
effective search space used: 81094240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)