Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002611-TA|BGIBMGA002611-PA|IPR013026|Tetratricopeptide
region, IPR003347|Transcription factor jumonji/aspartyl
beta-hydroxylase, IPR007087|Zinc finger, C2H2-type,
IPR001440|Tetratricopeptide TPR_1, IPR013129|Transcription factor
jumonji
         (859 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   3.4  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 780 GEASHYCGACEREVWHALLVREHERRH 806
           GE  ++C  C+R+      +R H R H
Sbjct: 34  GEKPYHCSHCDRQFVQVANLRRHLRVH 60


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,002
Number of Sequences: 429
Number of extensions: 9880
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 1
length of query: 859
length of database: 140,377
effective HSP length: 64
effective length of query: 795
effective length of database: 112,921
effective search space: 89772195
effective search space used: 89772195
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)