Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002611-TA|BGIBMGA002611-PA|IPR013026|Tetratricopeptide
region, IPR003347|Transcription factor jumonji/aspartyl
beta-hydroxylase, IPR007087|Zinc finger, C2H2-type,
IPR001440|Tetratricopeptide TPR_1, IPR013129|Transcription factor
jumonji
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 92 3e-19
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 41 6e-04
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 40 0.002
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 39 0.003
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 33 0.22
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 32 0.29
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 31 0.68
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 30 1.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 4.8
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 28 6.3
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 28 6.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 6.3
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 27 8.3
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 27 8.3
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 27 8.3
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 92.3 bits (219), Expect = 3e-19
Identities = 49/116 (42%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 54 GWLYHRCVSLGEPAARARAAIWCLQRAVAAEPESGAGLYLLGRCFAAQGKVHDAFIAYRN 113
GWL H+ S AI L +++ A+ YL+GRC+ AQ K + A+ AY+
Sbjct: 553 GWLCHQQSS---SFTNQDLAIQYLTKSLEADDTDAQSWYLIGRCYVAQQKYNKAYEAYQQ 609
Query: 114 SVEKSEGNADTWCSIGVLYQQQNQPMDALQAYICAVQLDKGHSAAWTNLGSLYESC 169
+V + N WCSIGVLY Q NQ DAL AY A++L+ S W +LG+LYESC
Sbjct: 610 AVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNPYISEVWYDLGTLYESC 665
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 78 QRAVAAEPESGAGLYLLGRCFAAQGKV---HDAFIAY-RNSVEKSEGNADTWCSIGVLYQ 133
+R +A P L LG Q D I Y S+E + +A +W IG Y
Sbjct: 536 ERVLAETPNHAKVLQQLGWLCHQQSSSFTNQDLAIQYLTKSLEADDTDAQSWYLIGRCYV 595
Query: 134 QQNQPMDALQAYICAVQLDKGHSAAWTNLGSLYESCQMPRDAFACYT 180
Q + A +AY AV D + W ++G LY +DA Y+
Sbjct: 596 AQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYS 642
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 73 AIWCLQRAVAAEPESGAGLYLLGRCFAAQGKVHDAFIAYRNSVE--KSEGNADTWCSIGV 130
AI Q + +P+ G LG C+ Q + A+ AYR ++ K + W IG+
Sbjct: 387 AIEYYQTILDCDPKQGEIWSALGHCYLMQDDLSRAYSAYRQALYHLKDPKDPKLWYGIGI 446
Query: 131 LYQQQNQPMDALQAYICAVQLD 152
LY + A +A++ +++D
Sbjct: 447 LYDRYGSHEHAEEAFMQCLRMD 468
Score = 35.9 bits (79), Expect = 0.024
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 78 QRAVAAEPESGAGLYLLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCSIGVLYQQ-QN 136
Q+AV + + +G + + DA AY ++ + ++ W +G LY+ N
Sbjct: 608 QQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNPYISEVWYDLGTLYESCHN 667
Query: 137 QPMDALQAYICAVQLD 152
Q DAL AY A +LD
Sbjct: 668 QISDALDAYQRAAELD 683
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 41.1 bits (92), Expect = 6e-04
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 68 ARARAAIWCLQRAVAAEPESGAGLYLLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCS 127
A + AI C+++A+ E ++ +LG F+ V A Y S+ +E ++ W +
Sbjct: 910 ATLQVAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLLLNERSSGVWAN 969
Query: 128 IGVLYQQQNQPMDALQAYICAVQLDKGHSAAWTNLGSLY 166
G L Q + A A+ ++ +D +S AW LG Y
Sbjct: 970 YGALCIQNHDVECANAAFTRSISIDPDNSQAW--LGKAY 1006
Score = 34.7 bits (76), Expect = 0.055
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 114 SVEKSEGNADTWCSIGVLYQQQNQPMDALQAYICAVQLDKGHSAAWTNLGSLYES 168
S + + NA+ + +GV Y Q ++ +AY+ A+++D+ AW L +LYES
Sbjct: 30 SFDANNYNANVF--LGVAYFSTKQLSESKEAYLDAIKIDEKAVLAWQGLWNLYES 82
Score = 34.3 bits (75), Expect = 0.073
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 77 LQRAVAAEPESGAGLYLLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCSIGVLYQQQN 136
++R AE G+Y+L R ++ + D+F A+ +S+ K A + S+G+ Y+ +
Sbjct: 532 VERFKIAEAYYRYGIYILNR--KSENYLEDSFSAFVSSLRKDPNYAPAYTSLGLYYRDIH 589
Query: 137 QPMDALQAYICAVQLD 152
+ A + + A +LD
Sbjct: 590 DMVRATKCFQKAFELD 605
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 105 HDAFIAYRNSVEKSEGNADTWCSIGVLYQQQNQPMDALQAYICAVQLD 152
H A + +++++ S + + W +G Y + + + AL+A+ A LD
Sbjct: 667 HKAIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/107 (20%), Positives = 50/107 (46%)
Query: 73 AIWCLQRAVAAEPESGAGLYLLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCSIGVLY 132
A+ C+ RA+ +P L G +A + + ++R ++ + + + W +G++Y
Sbjct: 450 ALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNVRHYNAWYGLGMVY 509
Query: 133 QQQNQPMDALQAYICAVQLDKGHSAAWTNLGSLYESCQMPRDAFACY 179
+ + A + A +++ +S T +G +YE C+ + A Y
Sbjct: 510 LKTGRNDQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDFY 556
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 92 YLLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCSIGVLYQQQNQPMDALQAYICAVQL 151
Y LG + G+ A ++ + E + N+ IG++Y++ AL Y A +L
Sbjct: 503 YGLGMVYLKTGRNDQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDFYDRACKL 562
Query: 152 DKGHSAA 158
D+ S A
Sbjct: 563 DEKSSLA 569
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 101 QGKVHDAFIAYRNSVEKSEGNADTWCSIGVLYQQQNQPMDALQAYICAVQLDKGHSAAWT 160
Q V +++A+ ++E + + ++WC + + Q + AL+ A+QLD A+T
Sbjct: 411 QKSVPLSYLAHE-TLETNPYSPESWCILANCFSLQREHSQALKCINRAIQLDPTFEYAYT 469
Query: 161 NLG 163
G
Sbjct: 470 LQG 472
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/107 (23%), Positives = 43/107 (40%)
Query: 73 AIWCLQRAVAAEPESGAGLYLLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCSIGVLY 132
A+ +RA+ + L+G + H A +YR +V+ + + W +G Y
Sbjct: 357 AVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDYRAWYGLGQTY 416
Query: 133 QQQNQPMDALQAYICAVQLDKGHSAAWTNLGSLYESCQMPRDAFACY 179
+ + AL + A L W LG+ YE P++A Y
Sbjct: 417 EVLDMHFYALYYFQRATALRPYDQRMWQALGNCYEKIDRPQEAIKSY 463
Score = 35.9 bits (79), Expect = 0.024
Identities = 25/108 (23%), Positives = 49/108 (45%)
Query: 72 AAIWCLQRAVAAEPESGAGLYLLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCSIGVL 131
AAI + AV + Y LG+ + A ++ + + W ++G
Sbjct: 390 AAIESYRLAVDVNRKDYRAWYGLGQTYEVLDMHFYALYYFQRATALRPYDQRMWQALGNC 449
Query: 132 YQQQNQPMDALQAYICAVQLDKGHSAAWTNLGSLYESCQMPRDAFACY 179
Y++ ++P +A+++Y A+ + +S+ LG+LYE Q A + Y
Sbjct: 450 YEKIDRPQEAIKSYKRALLGSQTNSSILVRLGNLYEELQDLNSAASMY 497
Score = 33.9 bits (74), Expect = 0.096
Identities = 16/79 (20%), Positives = 35/79 (44%)
Query: 93 LLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCSIGVLYQQQNQPMDALQAYICAVQLD 152
++G ++ + A ++ +++ + W +G Y + A+++Y AV ++
Sbjct: 343 IIGNYYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVN 402
Query: 153 KGHSAAWTNLGSLYESCQM 171
+ AW LG YE M
Sbjct: 403 RKDYRAWYGLGQTYEVLDM 421
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 578 GHVILGMNTV---QLYMKVPGSRTPGHQENNNFCSINL---NIGPGDCEWFGVPDAYWGG 631
G + LG+NTV Q+ +K+ + HQ F N+ NIG WFGV ++Y
Sbjct: 24 GQIYLGLNTVNGEQVAVKLEPLKARHHQLEYEFRVYNILKGNIGIPTIRWFGVTNSYNAM 83
Query: 632 VREL 635
V +L
Sbjct: 84 VMDL 87
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/81 (23%), Positives = 35/81 (43%)
Query: 85 PESGAGLYLLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCSIGVLYQQQNQPMDALQA 144
PE G L + G + G + + R + G+ W G++ + + A +
Sbjct: 41 PEHGESLAIKGILLHSLGNTKEGYDNVRLGLRNDVGSGVCWHIFGLISRADKDYVQAAKC 100
Query: 145 YICAVQLDKGHSAAWTNLGSL 165
YI A +L+K +S+ +L L
Sbjct: 101 YINAHKLEKNNSSLLRDLALL 121
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 31.1 bits (67), Expect = 0.68
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 476 DATGRRRVWACASHRSHTTVRKYAQYQAGSFQESLREERERAAPLSDSDSGPAKRRRAAR 535
D RR +C S RKY QYQ S ++++ R +SD +S PA R A
Sbjct: 124 DGKVRRDFGSCQITPSAKQQRKYLQYQI-SEDDAIKNRMFRR--MSDLESYPAVMRDVAE 180
Query: 536 MLRFGTNVDLSDERKWRPQLAELQKLPAFARVASAANMLSH 576
+ ++L + R L EL+KL + S + + H
Sbjct: 181 LKDDNERLNLDTIK--RNALVELKKLRLIKQQESLRHQVMH 219
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 29.9 bits (64), Expect = 1.6
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 1 MCTWRMFGDGFYQQGDKGVANGSVRVAGVLSGRGRAPSAGAHVQSAPALGRRGGWLYHRC 60
+ W+M G+ Q+G NG V + L A A AH++ + L+ C
Sbjct: 167 IAAWKMLGECHRQRG-----NGRVNIEKCLI----AWMAAAHLKP------KDHELWFTC 211
Query: 61 VSLGEPAARARAAIWCLQRAVAAEPESGAGL--YLLGRCF--AAQGKVHDAFIAYRNSVE 116
L E A +C RAV+A+P + + L Y+ R G + A ++ ++
Sbjct: 212 AKLSESLEFWDQADYCYNRAVSAKPPNKSELKKYIWNRSVLNKEHGSLKKAAEGFKFLLQ 271
Query: 117 KSEGNADTWCSIGVLYQQQNQPMDALQAY 145
S NA ++ +Y + + P + L+ +
Sbjct: 272 SSPYNASILKNLAEIYIKIHAPREILKQF 300
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 109 IAYRNSVEKSEGNADTWCSI-GVLYQQQNQPMDALQAYICAVQLDKGHSAAWTNLG 163
+ Y NS +KSE + ++ G ++ N+ +A Q Y AVQ+D G AW G
Sbjct: 2941 LMYFNSRQKSE-----FVTLKGKFLEKLNRGEEANQMYAAAVQIDLGLPKAWAEWG 2991
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 96 RCFAAQGKVHDAFIAYRNS-VEKSEGNADTWCSIGVLYQQQNQPMDALQAYICAVQLDKG 154
R A+G A Y+ + V + D IG+ + + DAL A+ QLD
Sbjct: 183 RILYAKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTRVQQLDPK 242
Query: 155 HSAAWTNLGSLY 166
++ T +G Y
Sbjct: 243 NTVVDTYIGLYY 254
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 698 PLTARQYTLALERYEWNKVQNFKSIVPMVHLTWNLARNIRVSDPRLHRAMRTCL 751
P R TL+ + EW++++NF + ++ + NL + P R M T +
Sbjct: 452 PTGHRINTLSCDEDEWDEIRNFMKCIALMFDSMNLGVIFYENAPSPQRYMHTAI 505
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 129 GVLYQQQNQPMDALQAYICAVQLDKGHSAAWTNLGSLYE 167
G+ + + +A QA+ AVQ+D G AW+ G ++
Sbjct: 2895 GMFQNRLGEKDEANQAFATAVQIDIGSGKAWSEWGLYHD 2933
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 496 RKYAQYQAGSFQESLREERERAAPLSDSD 524
RKY Q+ S+++ + ++R P+SDSD
Sbjct: 155 RKYPQHSLESWRQHYKYMKKRLPPVSDSD 183
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/79 (18%), Positives = 33/79 (41%)
Query: 102 GKVHDAFIAYRNSVEKSEGNADTWCSIGVLYQQQNQPMDALQAYICAVQLDKGHSAAWTN 161
G+ + ++ + V++ A TW ++G+ Y N+ +A + + + +D AW
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG 412
Query: 162 LGSLYESCQMPRDAFACYT 180
+ A + YT
Sbjct: 413 FAHSFAIEGEHDQAISAYT 431
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 498 YAQYQAGSFQESLREERERAAPLSDSDSG 526
Y ++ A + ESLRE+R PLS+ +G
Sbjct: 206 YNKFNAKLYLESLREKRRTYTPLSEISNG 234
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.134 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,714,069
Number of Sequences: 5004
Number of extensions: 148709
Number of successful extensions: 326
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 37
length of query: 859
length of database: 2,362,478
effective HSP length: 79
effective length of query: 780
effective length of database: 1,967,162
effective search space: 1534386360
effective search space used: 1534386360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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