GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002610-TA|BGIBMGA002610-PA|undefined
         (114 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   0.75 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   1.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   1.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    19   9.3  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 31  TIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTL 89
           TI  L  DYDF    +RA  EE + D     +  L  VK+V  +   +  + Q+  + L
Sbjct: 110 TIENLLADYDFSETLTRAKFEELNNDQF---LKTLKPVKKVLED--ADMTKDQIDEIVL 163


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 84  LSNLTLTTEHRWYPRARDKKAKKTEM 109
           ++ +TLT    W+  AR +  K+ +M
Sbjct: 123 ITKMTLTQVSTWFANARRRLKKENKM 148


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 38  DYDFPYEHSRALPEETSKD 56
           +YD PYE S +  + T+KD
Sbjct: 891 EYDGPYETSISSGQYTTKD 909


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 19.4 bits (38), Expect = 9.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 31  TIVALHQDYDFPYEHSRALPEETS 54
           T + L+   DFPY+    +P ++S
Sbjct: 205 TQLPLNLGLDFPYQGKFEVPTKSS 228


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,335
Number of Sequences: 317
Number of extensions: 906
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 114,650
effective HSP length: 49
effective length of query: 65
effective length of database: 99,117
effective search space:  6442605
effective search space used:  6442605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)
S2: 38 (19.4 bits)