GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002610-TA|BGIBMGA002610-PA|undefined
         (114 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25920| Best HMM Match : DUF1193 (HMM E-Value=2.2)                   30   0.52 
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.52 
SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.91 
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       27   3.7  
SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)                     27   3.7  
SB_53172| Best HMM Match : ABC_tran (HMM E-Value=5.4e-40)              27   4.9  
SB_33320| Best HMM Match : p450 (HMM E-Value=0)                        26   6.4  
SB_6706| Best HMM Match : p450 (HMM E-Value=0.54)                      26   6.4  
SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                26   8.5  
SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)                  26   8.5  
SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  

>SB_25920| Best HMM Match : DUF1193 (HMM E-Value=2.2)
          Length = 263

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 19  FYNKIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDE-VKRV--FNEM 75
           FY K ++       +  H D      +S    EE   DN+ L  +++DE VKRV    E 
Sbjct: 156 FYGKKLVAGGAGDNLP-HPDLGPLMFYSARGKEEIQHDNSFLNASEVDEVVKRVEELAEK 214

Query: 76  KP--EFARKQLSNLTLTTEHRWYPRA-RDKKAKK 106
            P  ++  KQLS + + + + +  RA RD+  +K
Sbjct: 215 WPNLQWGEKQLSEVAVLSAYHYQVRAIRDRLKRK 248


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 51  EETSKDNTVLKMTDLDE-VKRV--FNEMKP--EFARKQLSNLTLTTEHRWYPRA-RDKKA 104
           EE   DN+ L  +++DE VKRV    E  P  ++  KQLS + + + + +  RA RD+  
Sbjct: 590 EEIQHDNSFLNASEVDEVVKRVEELAEKWPNLQWGEKQLSEIAVLSAYHYQVRAIRDRLK 649

Query: 105 KK 106
           +K
Sbjct: 650 RK 651


>SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 43  YEHSRALPEETSKDNTVLKMTDLD--EVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRAR 100
           Y+HS AL EE + +    +   +   +V +V N M P FA   L N          PR +
Sbjct: 46  YDHSMALFEELNIEPFTKRARRIKCTKVFKVLNRMTPGFADVHLKNTRQAKNGLVLPRVK 105

Query: 101 DKKAKKT 107
               K+T
Sbjct: 106 HNYGKRT 112


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 23   IVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFN 73
            +VIT D ST+     D     E    + E+  K N V+K T   + ++ F+
Sbjct: 1390 VVITSDTSTVTIEDDDSLISVESPVEVLEDAGKANVVVKRTGNTKTRQTFS 1440


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 33  VALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVF-------NEMKPEFARKQLS 85
           + + +D     +H R    E  ++ TVL+  +LD+V +++        EM+ EF   +  
Sbjct: 261 MTIREDMITKRKHVRDRRREHREEETVLRKDELDKVAKLYEEEKQDLREMEQEFQNMEAK 320

Query: 86  NLTLTTEHRWYPRARDKKAKKTEMNRPY 113
              +  E R    A +KK ++  + R Y
Sbjct: 321 YNAILEERRLAAEA-EKKRQQELVQRNY 347


>SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 67  EVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 112
           E K V   +K   + K L N T    H WY +   KKAKK +   P
Sbjct: 223 EKKEVGELLKMCSSYKILKNFTEAKSHTWY-KFNGKKAKKIKTTCP 267


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 57  NTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWY 96
           N V  +T L ++     ++KPEF RK      L TE  W+
Sbjct: 513 NEVGSVTSLADINVQKAKVKPEFLRKVEDVTALETEQVWF 552


>SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)
          Length = 422

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/63 (20%), Positives = 31/63 (49%)

Query: 44  EHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKK 103
           EH       +++++++L+  D+   K+   E+K E   K+   +    +H+   R  +K+
Sbjct: 102 EHPTKKDPSSTENHSLLEEKDIPRDKKSDKELKEEKKEKEKERMKKEEKHKEKTRKEEKE 161

Query: 104 AKK 106
            +K
Sbjct: 162 REK 164


>SB_53172| Best HMM Match : ABC_tran (HMM E-Value=5.4e-40)
          Length = 665

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 4   LTRKIALIPRVALSRFYNKIVITDDGSTIVALHQDYD 40
           +TR++  +  +ALS  ++ I  T +G T + LH   D
Sbjct: 619 ITREVTRLQSLALSAVFSHISSTVEGLTTIRLHDARD 655


>SB_33320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 401

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 46  SRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTL-TTEHRWYPRARDKKA 104
           +R  P    K+N     T L  ++RV  E K  +  KQ+ NL +   + R      +++ 
Sbjct: 117 TRYFPFSAYKENQADFDTVLGIIRRVLEEGKAHYDTKQVDNLMMGLLKARSEAEHENEEE 176

Query: 105 KKTEMNRPYL 114
           KK  ++  YL
Sbjct: 177 KKALLSDDYL 186


>SB_6706| Best HMM Match : p450 (HMM E-Value=0.54)
          Length = 236

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 46  SRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTL-TTEHRWYPRARDKKA 104
           +R  P    K+N     T L  ++RV  E K  +  KQ+ NL +   + R      +++ 
Sbjct: 117 TRYFPFSAYKENQADFDTVLGIIRRVLEEGKAHYDTKQVDNLMMGLLKARSEAEHENEEE 176

Query: 105 KKTEMNRPYL 114
           KK  ++  YL
Sbjct: 177 KKALLSDDYL 186


>SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 782

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 13  RVALSRFYNKIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDE 67
           R +L     ++ ++D+   I      YD P+ H   L +E   D T     + DE
Sbjct: 706 RRSLDEEEEELTVSDEAKDIEDEAFIYDVPFRHEVTLEDENDDDQTDYPRGEEDE 760


>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
          Length = 165

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 30  STIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEV---KRVFNEMKPEFARKQLSN 86
           +T +  H+D   P  H+ A+P+  + + T+       EV   K   ++  PE   K   N
Sbjct: 73  NTTIPQHRDTTTPRYHNTAIPQHQNIEITLKTFDSYAEVLEKKSKDDDQDPEEMEKAAKN 132

Query: 87  LTLTTEHRWYPRARDKKAKKTEMNR 111
           L   T +     + + K   TE ++
Sbjct: 133 LLHGTGNILAAASDEAKVYGTEASK 157


>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 24  VITDDGSTIVAL-HQDYDFPYEHSRALPEETSKD-NTVLKMTDLDEVKRVFNEMKPEFAR 81
           +I DDG  +  L H+ Y    E  R L EET+   + + KM +  ++K     +     +
Sbjct: 130 MILDDGGDLTNLVHEKYTQYLEGIRGLSEETTTGVHNLYKMMEKGKLKITAINVNDSVTK 189

Query: 82  KQLSNL 87
            +  NL
Sbjct: 190 SKFDNL 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,764,103
Number of Sequences: 59808
Number of extensions: 137764
Number of successful extensions: 400
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 14
length of query: 114
length of database: 16,821,457
effective HSP length: 73
effective length of query: 41
effective length of database: 12,455,473
effective search space: 510674393
effective search space used: 510674393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)