GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002608-TA|BGIBMGA002608-PA|undefined
         (79 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    23   6.4  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    22   8.5  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    22   8.5  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    22   8.5  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 59  YGRPFAFNCYELL 71
           YGRP+  NC E L
Sbjct: 125 YGRPWRLNCAEAL 137


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
          S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 41 DHLLGPVLAPHY 52
          +H +G V+APHY
Sbjct: 22 NHKIGAVVAPHY 33


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 44  LGPVLAPHYRCHLLIYGRPFAFNCYELLVLA 74
           L P+L   +  H L YG  +      L+++A
Sbjct: 77  LWPILPTAFSLHFLFYGLGYNIASRRLMIMA 107


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 38  HRGDHLLGPVLAPHYRCHLLI 58
           H   H+LG      + CHL I
Sbjct: 121 HSSAHILGEATELSFHCHLCI 141


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.331    0.144    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,421
Number of Sequences: 5004
Number of extensions: 5962
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 79
length of database: 2,362,478
effective HSP length: 59
effective length of query: 20
effective length of database: 2,067,242
effective search space: 41344840
effective search space used: 41344840
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 45 (22.2 bits)