GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002608-TA|BGIBMGA002608-PA|undefined
         (79 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484     26   4.4  
07_03_1404 + 26329179-26329455,26329602-26330878                       25   5.8  
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213     25   7.7  

>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
          Length = 519

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 46  PVLAPHYRCHLLIYGRPFAF 65
           P++ PH+R  + +YGR F +
Sbjct: 81  PIVQPHFRKWIPLYGRTFLY 100


>07_03_1404 + 26329179-26329455,26329602-26330878
          Length = 517

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 42  HLLGPVLAPHYRCHLLIYGRPFA--FNCYELLVLAD 75
           H   P++ PH+R  + +YG+ F   F     + LAD
Sbjct: 75  HDFVPIVQPHFRKWIPLYGKTFMYWFGARPTICLAD 110


>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
          Length = 491

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 3/23 (13%)

Query: 60  GRPF---AFNCYELLVLADDVST 79
           GRPF    FN Y L+VLA D ST
Sbjct: 90  GRPFYVNGFNTYWLMVLAVDPST 112


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.331    0.144    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,575
Number of Sequences: 37544
Number of extensions: 46034
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 3
length of query: 79
length of database: 14,793,348
effective HSP length: 58
effective length of query: 21
effective length of database: 12,615,796
effective search space: 264931716
effective search space used: 264931716
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)