GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002608-TA|BGIBMGA002608-PA|undefined
         (79 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   0.79 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   7.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 0.79
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)

Query: 37  QHRGDHLLGPVLAPHYRCH 55
           QH G+H +GP + P +  H
Sbjct: 337 QH-GNHTMGPTMGPPHHHH 354


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.0 bits (37), Expect = 7.3
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 39  RGDHLLGPVLAPHYRCHLLIYGRPFAFNCYELL 71
           R D ++ P+     R   + + +PF +    +L
Sbjct: 515 RADMIVAPLTINPERAEFIEFSKPFKYQGITIL 547


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.331    0.144    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,660
Number of Sequences: 429
Number of extensions: 333
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 79
length of database: 140,377
effective HSP length: 47
effective length of query: 32
effective length of database: 120,214
effective search space:  3846848
effective search space used:  3846848
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (20.0 bits)
S2: 36 (18.6 bits)