Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002607-TA|BGIBMGA002607-PA|undefined
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0514 + 34450178-34450244,34450821-34451047,34451140-344512... 36 0.12
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 33 0.86
07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815... 32 1.5
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 32 1.5
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 32 2.0
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 31 3.5
11_06_0577 - 25158833-25162864 31 4.6
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 31 4.6
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 31 4.6
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 31 4.6
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20... 31 4.6
06_03_1167 + 28111923-28113218 30 6.1
11_06_0286 + 21945699-21946213,21946255-21947542 30 8.1
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715 30 8.1
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 30 8.1
08_02_0871 - 22075553-22075731,22075815-22076028,22076309-220763... 30 8.1
03_01_0368 + 2860640-2860855,2860959-2862203 30 8.1
>03_06_0514 +
34450178-34450244,34450821-34451047,34451140-34451275,
34451818-34451951,34452037-34452142,34452602-34452687,
34453204-34453365,34453918-34454034,34454222-34454464
Length = 425
Score = 35.9 bits (79), Expect = 0.12
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 173 LLKGSHSGSIYNST------EIRNLGKVFYELSAFSLGTFEFRLSSATHFGGQH-PSPVL 225
L+K S G Y++ E G+V E +S GT L S H H PS L
Sbjct: 199 LMKNSRDGKSYSTNLAFTPPEYLKTGRVIPESVVYSFGTILLDLLSGKHIPPSHAPSHAL 258
Query: 226 LDMVNDRIEKLPKSSASDMAKKHMKGGLDAKALAAIDSKG----SRSTEEFKKKTQSTAQ 281
L + +D+ E + S S +AK + + LD + +++ G R+T E + + Q
Sbjct: 259 LGIQHDK-ENTERISLSAIAKVYARADLD-EVHEMLENDGYCEDERATFEVSFHSWTGQQ 316
Query: 282 VNDAAATSDRNSS 294
V+D+ S
Sbjct: 317 VSDSILVKKHGDS 329
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 33.1 bits (72), Expect = 0.86
Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 232 RIEKLPKSSASDMAKKHMKGGLDAKALAAIDSKGSRSTEEFKKKTQSTAQVNDAAATSD- 290
R +KLP S A+D+ + + + + ST + KK+ +ST +T D
Sbjct: 134 RAKKLPDSPATDIEEPEL-----------VSLRLGTSTSKCKKEDKSTTSSEVKGSTEDF 182
Query: 291 ---RNSSNLNKTPSRYDANVSSRIGSETDXXXXXXXXXXXXXXXXQSTDMKPPMKVDKTV 347
+ +L + R DAN S ++ + ++T+ PP K+ K +
Sbjct: 183 LKIKGGLSLGLSDCRVDANNSEKVQPDVMTLSPEGSFEDARDDTAETTEQWPPSKMLKNL 242
Query: 348 K----ESADTARLHKKFERKLSVLVSKVTPPNMNDAMQ 381
+ E+ D + ++ + ++ P MND Q
Sbjct: 243 RSVGAEAEDDIAPQPQVKKARVSVRARCDAPTMNDGCQ 280
>07_02_0019 +
11877119-11879984,11880316-11880389,11881293-11881511,
11881557-11881679,11881759-11881859,11881938-11881990,
11882084-11882269,11882677-11882894
Length = 1279
Score = 32.3 bits (70), Expect = 1.5
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 169 KMQDLLKGSH----SGSIYNSTEIRNLGKVFYELSAFS-LGTFEFRLSSAT-HFGGQHPS 222
KMQ+ LK H G + N+ I N+ E S + T L T +H S
Sbjct: 818 KMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFS 877
Query: 223 PVLLDMVNDRIEKLPKSSASDMAKKHMKGGLDAKALAAID 262
+ +DM+N K+P DM + H K G KAL D
Sbjct: 878 SLFMDMINQG--KIPLDVVDDMIRDHCKEGNLDKALMLRD 915
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 32.3 bits (70), Expect = 1.5
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 83 GLNDTMNDASKHLAKIGAEKGRALDYLVGLMKERGESPLGQMQGYLQTYSDGAKRIMKAP 142
GL D M D+ HL + G + A+ L +PL M+ Y+Q + A+ I+
Sbjct: 634 GLIDKMADSVGHLIEHGQQLV-AIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILSME 692
Query: 143 VGVTASDDESMKVAMHSKVTSVI 165
SD ES+K++M +V ++I
Sbjct: 693 -----SDSESLKLSMSKQVNALI 710
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 31.9 bits (69), Expect = 2.0
Identities = 31/189 (16%), Positives = 78/189 (41%), Gaps = 5/189 (2%)
Query: 124 MQGYLQTYSDGAKRIMKAPVGVTASDDESMKVAMHSKVTSVIPDKKMQDLLKGSHSGSIY 183
+ G L + A + G + + E+++ + + + ++ +L+ ++ I+
Sbjct: 119 LAGLLNAIAVIASGVFAGLFGASQREKEALQSTVSTMEIKLAENEAAMSMLRENYEKQIW 178
Query: 184 NS-TEIRNLGKVFYELSAFSLGTFEFRLSSATHFGGQ-HPSPVLLDMVNDRIEKLPKSSA 241
N E + ++F E A L + T + L++ + I +L S A
Sbjct: 179 NEHAEQKKQARMFQEKEASLLDQLTLTKRTVTSLNEEVRREKELVEQLKQEIHRLKSSIA 238
Query: 242 SDMAKKHMKGGLDAKALAAIDS---KGSRSTEEFKKKTQSTAQVNDAAATSDRNSSNLNK 298
KH+ G + L A+DS K + ++E K ++ +++ + ++ + + L
Sbjct: 239 QAEDDKHVFEGKLREKLEALDSLQDKVNLLSQEVNAKEEAIRELSSSLSSKEEDYQKLQL 298
Query: 299 TPSRYDANV 307
+ +A++
Sbjct: 299 IYNETEASL 307
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 31.1 bits (67), Expect = 3.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 238 KSSASDMAKKHMKGGLDAKALAAIDSK-GSRSTEEFKKKTQSTAQVNDAAATSDRNSSNL 296
K+++SD ++ G K + SK S + +E+KK+ Q + ++ R S+
Sbjct: 526 KTTSSDSCSLNISAGAHFKKWCIMQSKIKSGAVDEYKKEVQEMLEFAESYMRKVRTSNQD 585
Query: 297 NKTPSRYD 304
N TP+ D
Sbjct: 586 NGTPTEQD 593
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 30.7 bits (66), Expect = 4.6
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 3/118 (2%)
Query: 261 IDSKGSRSTEEFKKKTQSTAQVNDAAATSDRNSSNLNKTPSRYDANVSSRIGSETDXXXX 320
+ ++GSR +K+ Q +D A SD + NL S V + E +
Sbjct: 293 VQAQGSRDK---RKQKQEEGGKDDKAMGSDDDDDNLQSQASDEKWQVFDEMWEEIEKRNF 349
Query: 321 XXXXXXXXXXXXQSTDMKPPMKVDKTVKESADTARLHKKFERKLSVLVSKVTPPNMND 378
D K +++KTV+ + + L +L + PP ND
Sbjct: 350 DDRIEQLKTKIDSIKDKKTTNEIEKTVRSQEKVNLNALVYNKPLGILFLALLPPMPND 407
>09_06_0311 +
22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 30.7 bits (66), Expect = 4.6
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 176 GSHSGSIYNSTEIRNLGKVFYELSAFSLGTFEFRLSSATHFGGQHPSPVL 225
G + +ST ++ L Y +S S G F+ S G HP P +
Sbjct: 693 GESKNYVVSSTAVQKLSSRLYRVSCPSKGNFKLLFSRGNMIGKDHPVPAV 742
>08_01_0087 +
630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 30.7 bits (66), Expect = 4.6
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 209 RLSSATHFGGQHPSPVLLDMVNDRIEKLPKSSASDMAKKHMKGGLDAKALAAIDSKGSRS 268
R +S T G P VL D+ N SA+++ +K + + AL ++D K +R+
Sbjct: 9 RPTSLTGSAGDPPLGVLSDITN--------LSAAELRRKRAR---ERYALLSVDEKEARN 57
Query: 269 TEEFKKKTQSTAQVN----DAAATSDRNSSNLNKTPSRYDANVSSRI 311
+ +K+ Q + AA + +S+LN TP R + + +
Sbjct: 58 KKAREKRRQKKEECQGGNQSGAAVKESEASHLNITPRRLPFTIINNV 104
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 30.7 bits (66), Expect = 4.6
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 680 STNVSKTSDERTAASNAPLKSDDVKINQIKTFSAPFSTTSRNIGNTNAEDNSH 732
+TN + +++ER A A L+ + ++ ++T A T+ R+ G T+A NSH
Sbjct: 553 ATNETCSAEERLAQLTAALQQKEDELAALRTQMAN-GTSQRDGGQTSASQNSH 604
>02_01_0033 +
202703-202705,203397-203458,203566-203665,203875-203916,
204264-204305,204437-204589,206559-207221
Length = 354
Score = 30.7 bits (66), Expect = 4.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 698 LKSDDVKINQIKTFSAPFSTTSRNIGNTNAEDNSHWLPPWNGSG 741
LK + V +Q K S+P+ST+ + N A+D+ H ++G G
Sbjct: 74 LKENMVLRDQCKALSSPWSTSVGELKNKQADDDVHRHEDYSGGG 117
>06_03_1167 + 28111923-28113218
Length = 431
Score = 30.3 bits (65), Expect = 6.1
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 260 AIDSKG-SRSTEEFKKKTQSTAQVNDAAA--TSDR--NSSNLNKTPSRYDANVSSRIGS 313
A D++G ++ +E K K S++Q AAA T+ R SS + PSRY + +GS
Sbjct: 271 ATDTRGGNKVVDELKPKGASSSQSGSAAAAATAKRMAGSSKMRVIPSRYSLTPGASLGS 329
>11_06_0286 + 21945699-21946213,21946255-21947542
Length = 600
Score = 29.9 bits (64), Expect = 8.1
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 48 AGPLESDPKCEDLKIQIETEMKRGVPAQVSPNIAAGLNDTMNDASK--HLAKIGAEKGRA 105
AG ++S P+ +QI + + V +V N+ A D + D K L K+G
Sbjct: 340 AGHIDSSPRNSGTSVQIPHRIDKMVNIEVLSNVKAQRRDDLEDTGKLWQLRKLGVVVDDK 399
Query: 106 LDYLVGLMK 114
+L L+K
Sbjct: 400 RGHLGNLLK 408
>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
Length = 456
Score = 29.9 bits (64), Expect = 8.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 359 KFERKLSVLVSKVTPPNMNDAMQGNVAIAEHIK-DASD 395
K ER +++LV ++ PP A QG EH + DA D
Sbjct: 84 KLERSIAMLVDRLPPPRQEHARQGRRPPPEHHEYDAED 121
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 29.9 bits (64), Expect = 8.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 670 SSPDSFYTPPSTNVSKTSDERTAASNAPLKSDDVKINQ 707
S DS Y PS++V+ S +N+ S+D+K+N+
Sbjct: 823 SDGDSNYEDPSSSVNSASHSDNELNNSQYGSNDIKLNE 860
>08_02_0871 -
22075553-22075731,22075815-22076028,22076309-22076351,
22076557-22076616,22077522-22077593,22078163-22078368,
22078782-22078837,22079540-22079777,22079908-22080081,
22080157-22080292,22080822-22080853,22081563-22081619,
22081713-22081965,22082057-22082145,22082590-22082643,
22084016-22084207,22085338-22085499
Length = 738
Score = 29.9 bits (64), Expect = 8.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 227 DMVNDRIEKLPKSSASDMAKKHMKGGLDAKALAAIDSKGSRSTE 270
D+ ND LP+ SAS + K +KG + +K I KGS + E
Sbjct: 650 DIENDLYSDLPRWSAS-LEKDRVKGSIGSKPARQIGYKGSDNVE 692
>03_01_0368 + 2860640-2860855,2860959-2862203
Length = 486
Score = 29.9 bits (64), Expect = 8.1
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 241 ASDMAKKHMKGGLDAKALAAIDSKGSRSTEEFKKKTQSTAQVNDAAATSDRNSSNLNKTP 300
A+ AK GG A+ LAA ++K + + E + + + D AA + + + K
Sbjct: 369 AAGEAKTDASGGAMAERLAAGEAKTAAAASEDENQAAAGGAAGDEAAAEEEGTKSNKKKA 428
Query: 301 SRYDANV 307
R A V
Sbjct: 429 ERVTAEV 435
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.128 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,619,263
Number of Sequences: 37544
Number of extensions: 822417
Number of successful extensions: 1828
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1822
Number of HSP's gapped (non-prelim): 19
length of query: 775
length of database: 14,793,348
effective HSP length: 88
effective length of query: 687
effective length of database: 11,489,476
effective search space: 7893270012
effective search space used: 7893270012
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -