GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002607-TA|BGIBMGA002607-PA|undefined
         (775 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   7.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   7.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   9.4  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   9.4  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 388 EHIKDASDYLSESVTTP 404
           E+ KDA  YL E  TTP
Sbjct: 431 ENFKDAKKYLPERWTTP 447


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 651 KREQNSDKSLVEHANTSESSSPDSFYTPPSTNVSKT 686
           K     +K LV   + ++S SP+S     ++N SKT
Sbjct: 69  KYSHTHEKKLVLERSKTKSKSPESRDRSNTSNTSKT 104


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 526 QALEDVVPAERLRAEPGSSKVQAPGIEISITDCPSKQTRVQKHA 569
           Q  + V+   R RA       +   +  +I +CP  +  VQK A
Sbjct: 46  QTKQSVLEEARQRANDAGLTEEEVVLAKTIAECPESENTVQKAA 89


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 667 SESSSPDSFYTPPSTNVSKTSDERTAASNAPLKSDDVKI 705
           S+S SPDS     ++N SKT       SN    SDD+ +
Sbjct: 80  SKSRSPDSRDRSSTSNTSKT----VILSNKLESSDDISL 114


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,559
Number of Sequences: 429
Number of extensions: 8033
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 775
length of database: 140,377
effective HSP length: 63
effective length of query: 712
effective length of database: 113,350
effective search space: 80705200
effective search space used: 80705200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)