GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002606-TA|BGIBMGA002606-PA|undefined
         (491 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        26   0.69 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   6.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   8.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   8.5  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   8.5  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 187 GDKRFLWARNATVAFARGVQQRLSRPGRY--TLADGMLRLSNIILDEVC 233
           GD   L   N +  F + +       GR    + D + RL+N  LD +C
Sbjct: 498 GDLSMLETNNLSETFTQNLSLMDESEGRQEPNMTDSLTRLANSALDNIC 546


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 343 TLLIKMMRSKQNEQLYKKEKAQRTLGTAAAEL 374
           TLLIK+   K+N +L +K+     L   A  L
Sbjct: 107 TLLIKLSEIKENTRLAEKQARISILELVAVHL 138


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 335 NKDKGPAFTLLIKMMRSKQNEQLYKKEKAQRTLGTAAAELKSAPGFTSTTPDVATTPIFV 394
           + DK P FT LI+++ + +  + + K+K    L  A +  K         P + T   F+
Sbjct: 771 SSDK-PNFTKLIQVVPTMELRREFDKQKPPLILAAAISGYKEVIDVAYDLPALGTVLDFM 829

Query: 395 GAL 397
             +
Sbjct: 830 SVM 832


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 347 KMMRSKQNEQLYKKEKAQRTLGTAAAELKSAPGFTSTTPDVATTPIFV-GALHKSADAAT 405
           K  R+K  +Q  +  + Q    ++  + KSAP  T T+P    TP+ +      S+ A++
Sbjct: 118 KNRRAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSP----TPVSINNNTSTSSSASS 173

Query: 406 P 406
           P
Sbjct: 174 P 174


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 409 LHKDMQDKALQVLLKMMKDN 428
           +H+D+QDK +Q L  +  D+
Sbjct: 14  VHQDIQDKVVQELYDIFGDS 33


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,517
Number of Sequences: 317
Number of extensions: 3393
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 491
length of database: 114,650
effective HSP length: 59
effective length of query: 432
effective length of database: 95,947
effective search space: 41449104
effective search space used: 41449104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)