GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002606-TA|BGIBMGA002606-PA|undefined
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   1.1  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   1.1  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   2.6  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   4.5  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    27   4.5  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    27   7.8  

>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 343 TLLIKMMRSK-QNEQLYKKEKAQRTLGTAAAELKSAPGFTSTTPDVATTPIFVGALHKSA 401
           T+L++    K   E++ ++   QR     A      P             +  G   K  
Sbjct: 33  TILLQSSPKKLSKEEIREQRLLQRAYALRACSNSLLPESIEARKCFLIESLKSGKYLKPV 92

Query: 402 DAATPKALHKDMQDKALQVLLKMMKDN 428
           D   PKA +  M DK L+ L++ MK N
Sbjct: 93  DPNAPKAANPLMDDKTLEGLMESMKGN 119


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 115 SKPPKRSIIYLWREYAHTLPPETISRLRTMLDADEPFKPDQAYEYFVNMKKTKKKAATSR 174
           S P   S    WR ++H +PP  +S L T  D ++P + +   +   +  K  K  +   
Sbjct: 602 SSPRDDSTPLSWRSHSHPIPPVQVSPLFTS-DKNDPLQLNPQSDDSTSSPKHGKSRSIDE 660

Query: 175 VNQIKKDVL 183
           V    KDV+
Sbjct: 661 VILSIKDVI 669


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 114 ISKPPKRSIIYLWREYAHTLPPETISRLRTMLDADEPFKPDQAY 157
           ISKPP +S+I L  E  HTL P   S L  + D    F+ D++Y
Sbjct: 273 ISKPPTKSLIRLLAE--HTLNPVEKSVLLALSD----FRQDESY 310


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 371 AAELKSAPGFTSTTPDVATTPIFVGALHKS---ADAATPKALHKDMQDKALQVLLKMMKD 427
           A E   AP  TS+TP V T      A   +   A  + P A   D   KAL+VL  ++  
Sbjct: 98  ADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHTLVAQ 157

Query: 428 NPSKEL 433
              K +
Sbjct: 158 KLKKSI 163


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 162 NMKKTKKKAATSRVNQIKKDVLELCGDKRFLWARNATVAFARG--VQQRLSRPGRYTLAD 219
           NM++     ATS V+Q    + ELC     ++  N+    + G  VQQ  ++   YT+ D
Sbjct: 791 NMEEMNFLQATSAVHQFW--LYELCD----VYIENSKYLLSDGTEVQQESAKQTLYTVLD 844

Query: 220 GMLRLSNIILDEVCGYMHMKPPSR 243
             LRL +  +  V   M  + P R
Sbjct: 845 NALRLMHPFMPYVTEEMWQRLPRR 868


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 435 KRNNYAMNYAVGANELETASNL-VPFLPVKDIADEEKANLTKDVENL 480
           + ++Y   +     EL T +NL +P++P   + DE+  +   +  NL
Sbjct: 200 EEHDYIQQFEALVQELVTTANLRLPYIPASFVDDEKDLDFAIETTNL 246


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,269
Number of Sequences: 5004
Number of extensions: 70331
Number of successful extensions: 223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 6
length of query: 491
length of database: 2,362,478
effective HSP length: 76
effective length of query: 415
effective length of database: 1,982,174
effective search space: 822602210
effective search space used: 822602210
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)