Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002606-TA|BGIBMGA002606-PA|undefined
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 31 2.1
06_01_0597 - 4312592-4313893 30 3.6
01_01_1204 + 9689855-9690844 30 3.6
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 29 6.4
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 29 6.4
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 8.4
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 29 8.4
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 29 8.4
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 31.1 bits (67), Expect = 2.1
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 334 FNKDKGPAFTLLIKMMRSKQNEQLYKKEKAQRTLGTAAAELKSAPGFTSTTPD-VATTPI 392
FN D + TL+ +++ SK+ ++ KKE+ +L T L G T + + T +
Sbjct: 393 FNSDCDKSNTLITELVNSKKLKE-QKKEEIAESL-TNCQRLAVECGATEDSVEYFCATQL 450
Query: 393 FVGALHKSADAATPKAL-HKDMQDKALQVLLKMMKDNPSKELAKRNNYAMNYAVGANELE 451
F ++ + + + + +D D + +++ ++K +E+ +R + +G LE
Sbjct: 451 FASKHNRDGEGSGDEDISDEDSSDDEIDLIIYILK---KREMDRRRACMLAAMIGTYYLE 507
Query: 452 TASNLVP 458
SN P
Sbjct: 508 LYSNKAP 514
>06_01_0597 - 4312592-4313893
Length = 433
Score = 30.3 bits (65), Expect = 3.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 130 AHTLPPETISRLRTMLDADEPFKPDQAYEYFVNMKKTKKKAATS 173
A LPPE +RL +M+D + P YF N AAT+
Sbjct: 267 ARALPPEAETRLHSMIDTRQRLSPPLPPGYFGNAVIRTSTAATA 310
>01_01_1204 + 9689855-9690844
Length = 329
Score = 30.3 bits (65), Expect = 3.6
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 333 EFNKDKGPAFTLLIKMMRSKQNEQLYKKEKAQRTLGTAAAELKSAPGFTSTTPDVATTPI 392
+F++ + LL+ +M+ + QL + E A T+ AAAE + G + VA
Sbjct: 106 DFSESRRRTAALLL-LMQEFRERQLQRLESATATISAAAAEAGAVVGTSRDAEGVALADY 164
Query: 393 FVG 395
F+G
Sbjct: 165 FLG 167
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 29.5 bits (63), Expect = 6.4
Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 334 FNKDKGPAFTLLIKMMRSKQNEQLYKKEKAQRTLGTAAAELKSAPGFTSTTPDVATTPIF 393
FN D + TL+ +++ SK+ ++ KKE+ +L + T +F
Sbjct: 398 FNSDCDKSNTLITELVNSKKLKE-QKKEEIAESLTNCKRLAVECGAAEDSVEYFCATQLF 456
Query: 394 VGALHKSADAATPKAL-HKDMQDKALQVLLKMMKDNPSKELAKRNNYAMNYAVGANELET 452
++ + + + + +D D + +++ ++K +E+ +R + +G LE
Sbjct: 457 ASKHNRDGEGSGDEDISDEDSSDDEIDLIIYILK---KREMDRRRACMLAAMIGTYYLEL 513
Query: 453 ASNLVP 458
SN P
Sbjct: 514 YSNKAP 519
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 29.5 bits (63), Expect = 6.4
Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 334 FNKDKGPAFTLLIKMMRSKQNEQLYKKEKAQRTLGTAAAELKSAPGFTSTTPDVATTPIF 393
FN D + TL+ +++ SK+ ++ KKE+ +L + T +F
Sbjct: 411 FNSDCDKSNTLITELVNSKKLKE-QKKEEIAESLTNCQRLAVECGAAEDSVEYFCATQLF 469
Query: 394 VGALHKSADAATPKAL-HKDMQDKALQVLLKMMKDNPSKELAKRNNYAMNYAVGANELET 452
++ + + + + +D D + +++ ++K +E+ +R + +G LE
Sbjct: 470 ASKHNRDGEGSGDEDISDEDSSDDEIDLIIYILK---KREMDRRRACMLAAMIGTYYLEL 526
Query: 453 ASNLVP 458
SN P
Sbjct: 527 YSNKAP 532
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 29.1 bits (62), Expect = 8.4
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 398 HKSADAATPKALHKDMQDKALQVLLKMMKDNPSKELAKRNNYAMNYAVGANELETASNLV 457
HK D P + +D K L+ +M+ + +KE + N V AN +T SN V
Sbjct: 150 HKVIDKTAPGLVPRDAVGKKLEQDTRMLVEVLTKEEKASGGESNNVHVVANS-DTESNNV 208
Query: 458 PFLPVKDIADEEKANLTKDV 477
+ + I K L K +
Sbjct: 209 TVVAILGIGGIGKTTLAKKI 228
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 29.1 bits (62), Expect = 8.4
Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 334 FNKDKGPAFTLLIKMMRSKQNEQLYKKEKAQRTLGTAAAELKSAPGFTSTTPDVATTPIF 393
FN D + TL+ +++ SK+ ++ KKE+ +L + T +F
Sbjct: 439 FNSDCDKSNTLITELVNSKKLKE-QKKEEIAESLTNCQRLAVECGAAEDSVEYFCATQLF 497
Query: 394 VGALHKSADAATPKAL-HKDMQDKALQVLLKMMKDNPSKELAKRNNYAMNYAVGANELET 452
++ + + + + +D D + +++ ++K +E+ +R + +G LE
Sbjct: 498 ASNHNRDGEGSGDEDISDEDSSDDEIDLIIYILK---KREMDRRRACMLAAMIGTYYLEL 554
Query: 453 ASNLVP 458
SN P
Sbjct: 555 YSNKAP 560
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 29.1 bits (62), Expect = 8.4
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 117 PPKRSIIYLWREYAHTLPPETISRLRTMLDADEPFK-PDQAYEYFVNMKKTKKKAATSRV 175
PP R I + A L PE + RL T++ FK PD +F+N KK K S+V
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPD----WFLNRKKDYKDGRFSQV 116
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,893
Number of Sequences: 37544
Number of extensions: 433900
Number of successful extensions: 1110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 8
length of query: 491
length of database: 14,793,348
effective HSP length: 85
effective length of query: 406
effective length of database: 11,602,108
effective search space: 4710455848
effective search space used: 4710455848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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