GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002605-TA|BGIBMGA002605-PA|IPR006616|Protein of unknown
function DM9
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    30   0.41 
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    29   0.94 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   1.6  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    28   1.6  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.6  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    27   3.8  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.0  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   5.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   6.7  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   6.7  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   8.8  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 95  QNGELEPIMKLECKEQNFNYFTFSMHRSIAPAHWRF--ELPPPEIKRPLKTVEGGKLQWI 152
           Q  E   +  L+  +QN NY T +   S++ +  +F  E  P  +K  + + +     + 
Sbjct: 257 QYTEKPALTLLQSPKQNSNYDTSNFQNSVSDSSMQFTNEGMPSPVKGIMSSDDAVAFNFS 316

Query: 153 KYEDSMPKNAVCGGHEHE 170
           +Y    P+NA   G+E E
Sbjct: 317 QYSTVYPQNAPENGNEFE 334


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 259 KVQPSHKVCYIPYKNEEKAFKYYEILIEPNQYPGFAYDSLIPSIKIDIEPN---IDDDRN 315
           K  P    CY+        + Y  ++  P ++ G+A D      +   E N   +DDD N
Sbjct: 117 KYNPDLDYCYLDNSTSPDEYVYVSLVQNPERFTGYAGDHSAAIWRSIYEQNCFVVDDDDN 176

Query: 316 SNNYDEEN 323
            +   + N
Sbjct: 177 PSEQPKSN 184


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 305 DIEPNIDDDRNSNNY-DEENDEGHYYSEDDED 335
           D     DDD N+N Y D+E+  G    E DED
Sbjct: 218 DTNDGTDDDINNNEYKDDESSSGSESYERDED 249


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 305 DIEPN-IDDDRNSNNYDEENDEGHYYS 330
           D+ PN I D  NSNN  E  D+ +YY+
Sbjct: 147 DVHPNDIFDSYNSNNIAESFDDDNYYN 173


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 305 DIEPNIDDDRNSNNYDEENDEGHYYSEDDED 335
           D+  N D++R  +   +E++    Y +DD D
Sbjct: 167 DVSDNTDEERTESKGQQESNSAEEYDDDDSD 197


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 285 IEPNQYPGFAYDSLIPSIKIDIEPNIDDDRNSNNYDEENDEGHYYSEDDEDYNA 338
           +E  +   F+Y  L+PS    + P  DDD + +  D+  +E     ++DED +A
Sbjct: 1   MEAEESESFSYPMLLPS--DGLYPEDDDDADMDQ-DKNPEENVMNEKEDEDVDA 51


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 296 DSLIPSIKIDIEPNIDDDRNSNNYDEENDEGHYYSEDDED 335
           D  IP+  ++    I  + +S+N +  N +G +Y++  ED
Sbjct: 14  DQTIPASNVNSGDFISSNTSSSNSENSNIQGKHYTQVGED 53


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 300 PSIKIDIEPNIDDDRNSNNYDEENDEGHYYSEDD 333
           PSI++ +  +I  D+N +  D E D+  Y  E++
Sbjct: 581 PSIQLSVSSSISRDKNLSPLDLELDDPTYSDEEE 614


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 303 KIDIEPNIDDDRNS----NNYDEENDEGHYYSEDDED 335
           ++D +  + DD  +    N YDE  D+ HY  EDDE+
Sbjct: 55  RLDEDDFVVDDNGAGYVDNGYDEW-DQSHYSDEDDEN 90


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 301 SIKIDIEPNIDDDRNSNNYDEENDEGHYYSEDDEDYN 337
           +IK +I    DDD N    DEE+ E    SE+DE  N
Sbjct: 361 AIKHEILGEEDDDEN--EEDEEDSEETSESEEDESVN 395


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 118 SMHRSIAPAHWRFELPPPEIKRPLKTVEGGKLQW 151
           S H ++   ++  E PPPE    LK ++G   +W
Sbjct: 551 SAHETLMHEYFTSESPPPEPAVILKNMQGSWHEW 584


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,068
Number of Sequences: 5004
Number of extensions: 87984
Number of successful extensions: 255
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 17
length of query: 338
length of database: 2,362,478
effective HSP length: 73
effective length of query: 265
effective length of database: 1,997,186
effective search space: 529254290
effective search space used: 529254290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)