GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002604-TA|BGIBMGA002604-PA|IPR006616|Protein of unknown
function DM9
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    28   3.0  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   5.3  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    26   9.2  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   9.2  

>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 168 GPHNCHVSLTTHPAEVDPMYEIIIGGWENTQSVIRYCRQK 207
           GPH+    L +HP  +  + +I +  + + Q V+ YC  K
Sbjct: 142 GPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESK 181


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 136 WKIEDGAEFDTPDRLEYKFGPVASGSLEFDY----RGPHNCHVSLTTHPAEVDPMYEII 190
           + I+D A++D PD ++Y      SG  +  Y    +G      SL+ HP   D +  +I
Sbjct: 190 FSIDDFAQYDIPDTIDYIL--KTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLI 246


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 394 ETEDGEPLYIGRV-RHEGSLTTGKVQQSHGVCYISFGGQ 431
           E E    +Y GRV + E SL T K+Q  H +  +   GQ
Sbjct: 40  EKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTLGQ 78


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 166 YRGPHNCHVSLTTHPAEVDPMYEIIIGG 193
           Y+G  N   + TT+P E  P+ E+I GG
Sbjct: 395 YQGYGNASNTTTTNPLEPYPIIELIDGG 422


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.140    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,672
Number of Sequences: 5004
Number of extensions: 86938
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 4
length of query: 443
length of database: 2,362,478
effective HSP length: 75
effective length of query: 368
effective length of database: 1,987,178
effective search space: 731281504
effective search space used: 731281504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)