GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002604-TA|BGIBMGA002604-PA|IPR006616|Protein of unknown
function DM9
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026)                  35   0.11 
SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)               31   2.5  
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)                 30   4.3  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           30   4.3  
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.3  
SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)          29   5.7  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.7  
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                29   7.5  
SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)                    29   10.0 

>SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026)
          Length = 338

 Score = 35.1 bits (77), Expect = 0.11
 Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 380 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQSHGVCYISFG---------G 430
           TSG       F  GE   GE    G VR   + TTG+ Q+  GV   S G         G
Sbjct: 126 TSGEVRQGETFASGEVRQGETFTSGEVRQGETFTTGEEQKGRGVITTSAGNHGLALAQQG 185

Query: 431 QELGFPDYEVLMP 443
            ELG P   VL+P
Sbjct: 186 DELGIP-VMVLLP 197



 Score = 29.5 bits (63), Expect = 5.7
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 379 PTSGSNVPPG-AFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 419
           PT    V  G  F  GE   GE    G VR   + T+G+V+Q
Sbjct: 58  PTGRGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 99



 Score = 28.7 bits (61), Expect = 10.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 380 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 419
           TSG       F  GE   GE    G VR   + T+G+V+Q
Sbjct: 71  TSGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 110



 Score = 28.7 bits (61), Expect = 10.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 380 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 419
           TSG       F  GE   GE    G VR   + T+G+V+Q
Sbjct: 82  TSGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 121



 Score = 28.7 bits (61), Expect = 10.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 380 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 419
           TSG       F  GE   GE    G VR   + T+G+V+Q
Sbjct: 93  TSGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 132



 Score = 28.7 bits (61), Expect = 10.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 380 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 419
           TSG       F  GE   GE    G VR   + T+G+V+Q
Sbjct: 115 TSGEVRQGETFTSGEVRQGETFASGEVRQGETFTSGEVRQ 154


>SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)
          Length = 1066

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 204 CRQKPDKVTIPTPGI-MNPNEFKKFLIEWR 232
           CRQ P KV +P PG+  +P+++ K +  WR
Sbjct: 930 CRQGPTKVVLPPPGVFQSPDQYSKKM--WR 957


>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
          Length = 878

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 7/43 (16%)

Query: 44  QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 85
           Q+ D MYEV+I       + +RK+ R+  D  E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 211 VTIPTPGIMNPNEFKKFLIEWRCGRLLVRDRMSGTVLMEWVDPAPFPVTHF 261
           + I T GI +  +   F +++R   L++      TV+ +W DP P  V ++
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGS--GATVIAQWTDPDPLEVGYY 49


>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 168  GPHNCHVSLTTHPAEVDPMYEIIIGGWENTQSVIRYCRQKPD 209
            G H   +++  +  E  PM   ++ G +++Q  IRYC  K D
Sbjct: 981  GTHPNELNVQLYDPESKPMKYTVVRGRDSSQCFIRYCDDKGD 1022


>SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 339 GATIP--GKLVPSHGCAYVPWGGIEHGKPQYQILVGGPNNWVPTSGSNVPP 387
           G T+P  G  VPS+G    P G      P     V      VPT+G+ VPP
Sbjct: 123 GTTVPYNGPTVPSNGATVPPNGATV---PSNGTTVPSNGTTVPTNGTTVPP 170


>SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)
          Length = 547

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 366 QYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGK 416
           +Y+I  GG       +     PG FPGG+    E ++   VR E  +  GK
Sbjct: 151 RYRIETGGGQGGTHNASYGTYPGIFPGGKGATMEGIFQITVRTELKIVIGK 201


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 42  GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 87
           GP +   +    +G W    S  R  +T  P KV +  PGI NG  Y
Sbjct: 84  GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130


>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 515

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 359 GIEHGKPQYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGR 405
           G+    P +Q  VGG + + P  G NV  G  PG E   G P   G+
Sbjct: 152 GLRPDAPPFQPRVGGGHMFQPP-GFNVQGGNKPGPENHSGPPFKPGQ 197


>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
          Length = 283

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 22  SGSVQFKVRAANDAHIALTTGPQESDPMYEVMI-------GGWGNAKSVIRKNRTKPDKV 74
           SGSV + V  A  +H  L    + + P+Y + +          G    V+R    +P+K 
Sbjct: 84  SGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNALPRPEKY 143

Query: 75  EIESPGILNG 84
              SPG L G
Sbjct: 144 PENSPGTLTG 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.140    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,091
Number of Sequences: 59808
Number of extensions: 692945
Number of successful extensions: 1038
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1026
Number of HSP's gapped (non-prelim): 17
length of query: 443
length of database: 16,821,457
effective HSP length: 84
effective length of query: 359
effective length of database: 11,797,585
effective search space: 4235333015
effective search space used: 4235333015
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)