GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002604-TA|BGIBMGA002604-PA|IPR006616|Protein of unknown
function DM9
         (443 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 135 SWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHN 171
           SW  + G EF   D  + K+  + SG L     GP +
Sbjct: 138 SWHTDQGEEFVPGDDYDGKYLVLPSGELHIRDVGPED 174


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 366 QYQILVGGPNNW-VPTSGSNVPPGAFPGGETEDGEPLYIGRVRHE 409
           Q   L  G   W +P+ G +  PG     E ++     IG+ +HE
Sbjct: 229 QPTFLCKGDGKWYLPSGGCHCKPGYQADVEKQECTECPIGKFKHE 273


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.140    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,110
Number of Sequences: 429
Number of extensions: 6579
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 2
length of query: 443
length of database: 140,377
effective HSP length: 60
effective length of query: 383
effective length of database: 114,637
effective search space: 43905971
effective search space used: 43905971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)