GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002603-TA|BGIBMGA002603-PA|undefined
         (81 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.10 
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    25   0.95 
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   1.7  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   2.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   2.9  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    24   2.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   3.8  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    23   3.8  
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    23   6.7  

>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 0.10
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 26   GDTPLEEINPDLAEAFNALP-AGRSAGKDVEAAPEIPEHYSSKLNVPEN 73
            G   + E+   +   F  L  AG  AG  +E  PEIP+H     N   N
Sbjct: 1379 GSESMAEVMESIKNVFMILHGAGALAGPTIEVDPEIPDHLIKTWNTTWN 1427


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 0.95
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 13  PQAPGYVPVYIRSGDTPLEEINP----DLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKL 68
           PQ    +  Y+ +GD PL++       D+ EA +  P   +    V  A  IP+ + S L
Sbjct: 156 PQLDSMIQEYLSNGDLPLQQSTEDYVYDIYEASSKEPNKPTFAYGVIDALSIPDAFRSSL 215

Query: 69  NVPENPEIGDS 79
                 E  DS
Sbjct: 216 EQELVSETVDS 226


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 28  TPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPENPEI 76
           TP  +   DL++A +++    +   ++E +P++PE Y   L +  N ++
Sbjct: 618 TPRHKPKFDLSKALSSV----AKSNNIENSPQLPERYDFSLELGLNSQL 662


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 22 YIRSGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPE 62
          +I  G  P +++  DL EAFN +       + VEA    P+
Sbjct: 19 FIELGMEPAQKVQVDLDEAFNQMLHDGKVEEVVEAINGSPD 59


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 14/46 (30%), Positives = 18/46 (39%)

Query: 26  GDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVP 71
           GDT  + I       F   P     G D  +AP   E  +S +N P
Sbjct: 111 GDTDSDWILVGFNNNFGLAPRNYVEGMDASSAPASQEPSASGVNAP 156


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 39  EAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPENPEIG 77
           E   +L    S  +D  +AP +P+H S  L    N + G
Sbjct: 232 ENMRSLLRSYSGNRDSSSAPAVPQHMSGYLKKWTNYKSG 270


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 25  SGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPENP 74
           S  +PL   +     + +  P G S+       P +P   +S  ++P  P
Sbjct: 103 SSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 152


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 48  RSAGKDVEAAPEIPEHYSSKLNVPE 72
           R   KD    P I E    +LN+PE
Sbjct: 183 REFSKDTNPPPAIREKIGRELNIPE 207


>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 41  FNALPAGRSAGKDVEAAPEIPEHYSSKLNVP 71
           +  L    +A  +VE A  IP +YSS+++ P
Sbjct: 129 YKILQTSETAISEVENALGIPLNYSSQVSPP 159


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,460
Number of Sequences: 5004
Number of extensions: 16431
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 11
length of query: 81
length of database: 2,362,478
effective HSP length: 60
effective length of query: 21
effective length of database: 2,062,238
effective search space: 43306998
effective search space used: 43306998
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)