GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002603-TA|BGIBMGA002603-PA|undefined
         (81 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0366 - 17232010-17232061,17232546-17232601,17232692-172327...    29   0.62 
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417...    28   0.82 
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451     28   0.82 
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455...    27   1.4  
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034     27   1.9  
08_02_1085 + 24237804-24238403                                         27   2.5  
02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817           27   2.5  
10_08_0918 - 21560635-21560795,21560847-21560935,21561696-215617...    25   7.6  

>10_08_0366 -
           17232010-17232061,17232546-17232601,17232692-17232727,
           17232861-17232941,17233060-17233131,17233394-17233465,
           17233555-17233659,17233754-17233804,17234075-17234109,
           17234692-17234736,17234940-17234973
          Length = 212

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 30  LEEINPDLAEAFNALPAGRSAGKDVEA--APEIPEHYSSKLNVPENP 74
           L+EI  D+A   ++ P GR  GK V+A  + E+ E    +L   +NP
Sbjct: 167 LDEIGVDIASQLSSAPKGRITGKKVQADESSELDE-LEKRLAALKNP 212


>12_01_0526 -
           4171313-4171417,4171514-4171597,4171688-4171758,
           4171814-4171891,4174482-4174569,4174659-4174850,
           4174939-4175802
          Length = 493

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 31  EEINPDLAEAFNALPAGRSAGKDVEAAPEIPE 62
           +++N DL     + P GR   KDVEAA   P+
Sbjct: 200 KDLNVDLNSITGSGPGGRIVAKDVEAAAAAPK 231


>07_01_1120 -
          10338265-10338624,10338739-10338873,10339411-10340451
          Length = 511

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 47 GRSAGKDVEAAP-EIPEHYSSKLNVPENPEIGDSR 80
          GR A K  EAAP   P    S+ +VP  P  GD R
Sbjct: 18 GREARKSKEAAPPREPRRARSRSHVPPPPGAGDGR 52


>02_05_0869 -
           32344821-32344916,32345255-32345347,32345418-32345551,
           32345863-32346013,32346337-32346407,32346683-32346828,
           32347172-32347221,32347552-32347628,32347716-32347776,
           32347859-32347912,32347999-32348058,32348491-32348624,
           32349740-32350418
          Length = 601

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 13  PQAPGYVPVYIRSGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKL--NV 70
           P    +VP  + +   P+E++ P      N +P  ++   +V+A P++    + K    +
Sbjct: 455 PDLADFVPSGVPNSAEPIEKVTPTNVPRQNDVPKEKTCLPEVKAKPKVQNKGAEKTQSKI 514

Query: 71  PEN 73
           P N
Sbjct: 515 PTN 517


>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
          Length = 760

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 36  DLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPEN 73
           DL   F ++PAG  A + V++AP I  H  +++NV  N
Sbjct: 308 DLRRGFWSVPAGIEATELVQSAPSI--HCDTEVNVLNN 343


>08_02_1085 + 24237804-24238403
          Length = 199

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 25  SGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPENPEIGD 78
           SG +      PD      +  AG  +GK   +AP+     SS+     +P+ GD
Sbjct: 79  SGKSEAPSEAPDAESGAESPEAGEESGKSPASAPKDSSSSSSEEEEASSPDSGD 132


>02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817
          Length = 633

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 25  SGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPEN 73
           SG+ P E I+   + AF  +   R  G+  E++P +P H    LN+  N
Sbjct: 107 SGELPPELIS-SASVAFLDVSFNRLNGELQESSPSLPHHPLQVLNISHN 154


>10_08_0918 -
           21560635-21560795,21560847-21560935,21561696-21561760,
           21561841-21561892,21562271-21562356,21562457-21562626,
           21562748-21562831,21563284-21563354,21563461-21563621
          Length = 312

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 27  DTP-LEEINPDLAEAFNALPAGRSAGKDVEAAPEIPE 62
           D P ++ ++    E  N++P+  SAGK  E   +IP+
Sbjct: 114 DIPSMDTLDIGKTEGINSIPSYFSAGKKAEEEEDIPD 150


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,039
Number of Sequences: 37544
Number of extensions: 115643
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 8
length of query: 81
length of database: 14,793,348
effective HSP length: 60
effective length of query: 21
effective length of database: 12,540,708
effective search space: 263354868
effective search space used: 263354868
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)