Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002603-TA|BGIBMGA002603-PA|undefined
(81 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 30 0.30
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41) 28 0.91
SB_21607| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) 27 2.1
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.7
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07) 26 3.7
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6) 26 4.9
SB_10741| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.71) 26 4.9
SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042) 25 6.4
SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 52 KDVEAAPEIPEHYS-SKLNVPENPEI 76
KD + APEIP H +LNVPE EI
Sbjct: 3580 KDKQYAPEIPGHEDRQELNVPEGQEI 3605
>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
Length = 686
Score = 28.3 bits (60), Expect = 0.91
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 20 PVYIRSGDTPLEEINPDLAEAFNALPAGRS----AGKDVEAAPEIPEHYSSKLNVPENPE 75
P R T E PD + P + A + AA PEH ++ N P++
Sbjct: 408 PTTSRPSHTSATEYYPDRQAPGHRTPDRHTHNNHAPESYPAAQHTPEHLTNTRNTPDHTH 467
Query: 76 IGDS 79
+GDS
Sbjct: 468 VGDS 471
>SB_21607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 27 DTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPENPE 75
+ PL EIN L+ + N LP G A D + P S+ + NP+
Sbjct: 151 EIPLGEINQGLSTSANDLPQGTQASWD-DGEPSQSNQASTTGSTGSNPD 198
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 13 PQAPGYVPVYIRSGDT--PLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYS 65
PQ GY+ VY R +T L+ P L NALP G ++ E E+ S
Sbjct: 1244 PQPKGYLTVYFRVQETRLDLDSYEPLLG---NALPLGPTSACSTERQNELANQRS 1295
>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
Length = 808
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 15 APGYVPVYIRSGDTPLEEINPDLAE 39
APG +PV IRSG P DL E
Sbjct: 655 APGLIPVVIRSGPPPKNTEVKDLRE 679
>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1732
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 22 YIRSGDTPLEEINPDLAEAFNALPAGRSAGKDVEA-APEIPEHYSSKLNVPENPEI 76
Y + T L E N A+N G A V+A P +S NV E E+
Sbjct: 281 YTAAASTGLPEFNEFTCAAYNLAGGGHKASVTVQAKVPPAITGFSPPQNVAEGSEV 336
>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
Length = 827
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 61 PEHYSSKLNVPENPEIG 77
PE YSS+ N+P PE G
Sbjct: 407 PEGYSSQTNIPTKPEEG 423
>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 972
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 14 QAPGYVPVYIRSGDTPLEEINPDLAEAFNA 43
Q PGY P Y+ + P +N D+A +A
Sbjct: 644 QVPGYQPAYLHTPYQPQYGLNKDVATLSHA 673
>SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6)
Length = 235
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 46 AGRSAGKDVEAAPEIPEHYSSKLNVPE 72
A S G + +A+PE Y + +N+PE
Sbjct: 70 ASPSGGAEAKASPEANAKYRAHVNIPE 96
>SB_10741| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.71)
Length = 281
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 48 RSAGKDVEAAPEIPEHYSSKLNVPENPEIGDSR 80
R K ++ E +HY +K+ P PE G R
Sbjct: 23 RQDNKTIDEVAEYIQHYYNKVQRPSTPERGPLR 55
>SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)
Length = 593
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 21 VYIRSGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPENP 74
+Y++S ++++N DL + F + + G+ E Y + +N E P
Sbjct: 208 LYLKSMLNKMDDVNVDLVDDFLPAVSAHAPGRQTAFRYEAASSYINIVNKAERP 261
>SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 28 TPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKL 68
T ++ ++ + A+A + P G +D++ E+ EH S L
Sbjct: 281 TYVQGVHQNTADALSRAPTGSPTPQDLKQIEELEEHSESVL 321
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.133 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,862
Number of Sequences: 59808
Number of extensions: 117014
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 12
length of query: 81
length of database: 16,821,457
effective HSP length: 59
effective length of query: 22
effective length of database: 13,292,785
effective search space: 292441270
effective search space used: 292441270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)
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