GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002603-TA|BGIBMGA002603-PA|undefined
         (81 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY386362-1|AAR25619.1| 1780|Homo sapiens breast cancer-associate...    30   1.0  
BC034246-1|AAH34246.1|  468|Homo sapiens embryonal Fyn-associate...    29   1.8  
AB001467-1|BAA24589.1|  468|Homo sapiens Efs2 protein.                 29   1.8  
AB001466-1|BAA24588.1|  561|Homo sapiens Efs1 protein.                 29   1.8  
U40572-1|AAC50449.1|  540|Homo sapiens beta2-syntrophin protein.       28   4.1  
BC048215-1|AAH48215.1|  540|Homo sapiens syntrophin, beta 2 (dys...    28   4.1  
AF243385-1|AAK15149.1|  267|Homo sapiens beta-2 syntrophin protein.    28   4.1  

>AY386362-1|AAR25619.1| 1780|Homo sapiens breast cancer-associated
           antigen SGA-72M protein.
          Length = 1780

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 13  PQAPGYVPVYIRSGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPE 72
           P A  Y PV    G + ++ ++ D +E   A+P      +D + A ++   YSS  +   
Sbjct: 379 PSAKAYQPVKKSQGVSSMDSLSTDQSEYNQAIPKRVVLDED-DQASQLSNSYSSNKSKET 437

Query: 73  NPEI-GDSR 80
            P+I G SR
Sbjct: 438 KPQIAGPSR 446


>BC034246-1|AAH34246.1|  468|Homo sapiens embryonal Fyn-associated
           substrate protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 5   ARPKWQFLPQAPGY--VPVYIRSGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPE 62
           + P  +  PQ PG    P  +     P  E+ PDL         GR  G  + AAP   +
Sbjct: 77  SHPLTRVAPQPPGEDDAPYDVPLTPKPPAELEPDLE-----WEGGREPGPPIYAAPSNLK 131

Query: 63  HYSSKLNVPENPE 75
             S+ LN+ E PE
Sbjct: 132 RASALLNLYEAPE 144


>AB001467-1|BAA24589.1|  468|Homo sapiens Efs2 protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 5   ARPKWQFLPQAPGY--VPVYIRSGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPE 62
           + P  +  PQ PG    P  +     P  E+ PDL         GR  G  + AAP   +
Sbjct: 77  SHPLTRVAPQPPGEDDAPYDVPLTPKPPAELEPDLE-----WEGGREPGPPIYAAPSNLK 131

Query: 63  HYSSKLNVPENPE 75
             S+ LN+ E PE
Sbjct: 132 RASALLNLYEAPE 144


>AB001466-1|BAA24588.1|  561|Homo sapiens Efs1 protein.
          Length = 561

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 5   ARPKWQFLPQAPGY--VPVYIRSGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPE 62
           + P  +  PQ PG    P  +     P  E+ PDL         GR  G  + AAP   +
Sbjct: 170 SHPLTRVAPQPPGEDDAPYDVPLTPKPPAELEPDLE-----WEGGREPGPPIYAAPSNLK 224

Query: 63  HYSSKLNVPENPE 75
             S+ LN+ E PE
Sbjct: 225 RASALLNLYEAPE 237


>U40572-1|AAC50449.1|  540|Homo sapiens beta2-syntrophin protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 25 SGDTPLEEINPDL---AEAFNALPAGRSAGKDVEAAP 58
          +GD    E+ P L   A AFN LP G  AG  +  +P
Sbjct: 51 TGDAAAAELEPALGPAAAAFNGLPNGGGAGDSLPGSP 87


>BC048215-1|AAH48215.1|  540|Homo sapiens syntrophin, beta 2
          (dystrophin-associated protein A1, 59kDa, basic
          component 2) protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 25 SGDTPLEEINPDL---AEAFNALPAGRSAGKDVEAAP 58
          +GD    E+ P L   A AFN LP G  AG  +  +P
Sbjct: 51 TGDAAAAELEPALGPAAAAFNGLPNGGGAGDSLPGSP 87


>AF243385-1|AAK15149.1|  267|Homo sapiens beta-2 syntrophin
          protein.
          Length = 267

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 25 SGDTPLEEINPDL---AEAFNALPAGRSAGKDVEAAP 58
          +GD    E+ P L   A AFN LP G  AG  +  +P
Sbjct: 51 TGDAAAAELEPALGPAAAAFNGLPNGGGAGDSLPGSP 87


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.312    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,495,574
Number of Sequences: 224733
Number of extensions: 595776
Number of successful extensions: 942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 7
length of query: 81
length of database: 73,234,838
effective HSP length: 59
effective length of query: 22
effective length of database: 59,975,591
effective search space: 1319463002
effective search space used: 1319463002
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)