Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002601-TA|BGIBMGA002601-PA|undefined
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   7.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   7.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    19   9.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   9.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   9.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    19   9.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 38  FPTEQEALELERIKGDKIQAPDGIYFQPEDEALSLESEKKYL 79
           F  E+E L L     +KI  PD  +   ++  L   +E+  L
Sbjct: 99  FSQEEEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKL 140


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 35  LRGFPTEQEALELERIKGDKIQAPDGIYFQPED 67
           L+  P E   +E+  +  D I  PD + +   D
Sbjct: 86  LKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNAD 118


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
          kinase foraging protein.
          Length = 678

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 40 TEQEALELERIKGDKIQAPDGIYFQPEDEALSLESE-KKYLYVKS 83
          T +E  EL R+K +KI   + +  + + E   L S   K+L   S
Sbjct: 3  TLRELQELLRVKDEKIVELEALLCRRDAEIQELRSHLDKFLQCAS 47


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 18  AKDQELYKVSGADLIDLLRGFPTE 41
           A +  L+ ++ +DL+ L+ G P E
Sbjct: 87  ATNYYLFSLAVSDLLLLISGLPPE 110


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like
          GPCR protein.
          Length = 381

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 18 AKDQELYKVSGADLIDLLRGFPTE 41
          A +  L+ ++ +DLI L+ G P E
Sbjct: 74 ATNYYLFSLAISDLILLVLGLPNE 97


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 35  LRGFPTEQEALELERIKGDKIQAPDGIYFQPED 67
           LR  P E   +++  +  D I  PD + +   D
Sbjct: 90  LRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNAD 122


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 35  LRGFPTEQEALELERIKGDKIQAPDGIYFQPED 67
           LR  P E   +++  +  D I  PD + +   D
Sbjct: 90  LRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNAD 122


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 45  LELERIKGDKIQAP 58
           LE E + G K+Q P
Sbjct: 288 LEKEMLNGQKLQGP 301


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,015
Number of Sequences: 429
Number of extensions: 895
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)