GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002601-TA|BGIBMGA002601-PA|undefined
         (105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   2.5  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    24   5.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    24   5.8  

>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 57  APDGIYFQPEDEALSLESEKK 77
           A DGIY  P   A++++SEK+
Sbjct: 164 AKDGIYRPPRIRAVTMDSEKR 184


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 12  LFNYNDAKDQELYKVSGADLIDLLRGFPTEQEALELERIKGDKIQAPDGIYFQPEDEALS 71
           L+  N  + ++L +  G D+ D +  FP E  ALE E   G  I   D +   P     +
Sbjct: 195 LYLENTKETEKLAEERGWDIRDGVIYFPKEANALETE--DGMLIDEEDELELPPTASKHT 252

Query: 72  LESEKKYL 79
           + S ++ L
Sbjct: 253 ISSIRQLL 260


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 4   CVLFVLLSLFNYNDAKDQELY 24
           C++F+L +L  YN  K Q+ Y
Sbjct: 273 CIVFLLPTLSEYNPKKFQQRY 293


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,844
Number of Sequences: 5004
Number of extensions: 16457
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 2,362,478
effective HSP length: 63
effective length of query: 42
effective length of database: 2,047,226
effective search space: 85983492
effective search space used: 85983492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)