GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002601-TA|BGIBMGA002601-PA|undefined
         (105 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    29   0.94 
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233...    29   0.94 
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595...    27   3.8  

>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 29   ADLIDLLRGFPTEQEALELERIKGDKIQAPDGIYFQPEDEALSLE-SEKKYLYVK 82
            +++ID  +G+    + LE++  + +K  A   I +  E EAL LE SE K L ++
Sbjct: 1495 SEIIDKEKGYEARLKELEIKMQEKEKDTAESFISWNKEREALELEVSEAKSLAIQ 1549


>08_02_0746 +
           20721421-20721649,20722912-20722971,20723318-20723377,
           20723458-20723553,20723764-20723871,20724037-20724090,
           20724275-20724414,20724499-20724570,20724642-20724692,
           20724943-20725017,20725205-20725585,20726372-20727604,
           20727679-20727831
          Length = 903

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/75 (21%), Positives = 37/75 (49%)

Query: 7   FVLLSLFNYNDAKDQELYKVSGADLIDLLRGFPTEQEALELERIKGDKIQAPDGIYFQPE 66
           F ++   NY+    +   +V+        +G PT Q   +   + G+ ++A +G+Y + E
Sbjct: 404 FSIVRAHNYHTTSKKRNGEVTRVTFRCNRQGKPTSQSKSKAFNLSGNLLKAKEGLYDEYE 463

Query: 67  DEALSLESEKKYLYV 81
           D   +  +E+++ Y+
Sbjct: 464 DIINNSVTEEEFEYL 478


>05_03_0608 +
           16153992-16154960,16158959-16159168,16159252-16159512,
           16160153-16160197,16160324-16160410,16160679-16160774
          Length = 555

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/51 (23%), Positives = 27/51 (52%)

Query: 2   QWCVLFVLLSLFNYNDAKDQELYKVSGADLIDLLRGFPTEQEALELERIKG 52
           Q+C   +  SL   N ++   L +    D++++++G+ T Q A   + ++G
Sbjct: 484 QYCFTKLFRSLVENNRSELNRLDREKKEDMLEMIKGYVTSQAAYAEKIVEG 534


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,466
Number of Sequences: 37544
Number of extensions: 97925
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 14,793,348
effective HSP length: 72
effective length of query: 33
effective length of database: 12,090,180
effective search space: 398975940
effective search space used: 398975940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)