GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002601-TA|BGIBMGA002601-PA|undefined
         (105 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.56 
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.74 
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.0  
SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)                       27   3.9  
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       27   3.9  
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.2  
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)             25   9.1  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.1  

>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 23  LYKVSGADLIDLLRGFPTEQEALELERIKGDKIQAPD 59
           ++ V+GA L++ ++    E EA+E   ++G+K  APD
Sbjct: 415 IFNVAGASLVEKVK--EAEPEAMETAPVEGEKKDAPD 449


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 6   LFVLLSLFNYNDAKDQ--ELYKVSGADLIDLLRGFPTEQEALELE 48
           L   L L    +AKDQ  EL   S AD++DL+   P++ E  ++E
Sbjct: 227 LIFFLVLVMIVNAKDQIFELKTASKADILDLIASIPSQLEVEDIE 271


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 41  EQEALELERIKGDKIQAPDGIYFQP 65
           E++A EL   + D   A DGI+F+P
Sbjct: 499 EEDASELGSTRHDSASADDGIHFEP 523


>SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)
          Length = 540

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 6/33 (18%)

Query: 47  LERIKGDKIQAPDGIYFQPEDEALSLESEKKYL 79
           LERIKGD+++      +Q E + L LE E+K L
Sbjct: 470 LERIKGDRVE------YQEELKELELEDEEKLL 496


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 2  QWCVLFVLLSLFNYNDAKDQELYKVSGADL 31
          QWC LF LL++ + N    Q +   +GAD+
Sbjct: 35 QWCPLFYLLAVHHLNAFIFQRVDPKAGADI 64


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 30  DLIDLLRGFPTEQEALELERIKGDKIQAPDGIYFQPEDEALSLESEKKYLYVK 82
           + + +L G PTE+   E    K +K + P+    + E E    E+EKK +  K
Sbjct: 182 ETLGVLLGIPTEEGHSEGPPSKQEKKEEPEPEKMETETEPELAENEKKAMEEK 234


>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 19  KDQELYKVSGADLIDLLRGFPTEQEALE-LERIKGDKI 55
           K Q     SGA  +DL  G+P   E L  L R++ D++
Sbjct: 292 KPQTALSESGAGDLDLPHGYPVVDEVLSLLGRLETDRV 329


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 8   VLLSLFNYNDAKDQELYKVSGADLIDLLRGFPTEQEALELE 48
           VL  L  Y D + Q L  +   D+++L R    E +A+E E
Sbjct: 402 VLSELQEYQDVQSQFLSSLPNKDMLELRRVRDEEVQAIEEE 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,606
Number of Sequences: 59808
Number of extensions: 106796
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 8
length of query: 105
length of database: 16,821,457
effective HSP length: 72
effective length of query: 33
effective length of database: 12,515,281
effective search space: 413004273
effective search space used: 413004273
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)