GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002601-TA|BGIBMGA002601-PA|undefined
         (105 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036197-1|AAH36197.1|  196|Homo sapiens MGC39545 protein protein.     29   1.9  
BC039260-1|AAH39260.1|  765|Homo sapiens RBM12B protein protein.       29   2.6  

>BC036197-1|AAH36197.1|  196|Homo sapiens MGC39545 protein protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 24  YKVSGADLIDLLRGFPTEQEALELERIKGDKIQAPDGIYFQPEDEALSLESEKK 77
           ++VS + L++   G P++   L+L      K++ P G  F P+D    L+  +K
Sbjct: 141 FRVSHSPLLEAEAGRPSDVSQLQLGSDLKPKMRRPAGELFSPKDAGWELDPAEK 194


>BC039260-1|AAH39260.1|  765|Homo sapiens RBM12B protein protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 27  SGADLIDLLRGFPTEQEALELERIKGDKIQAPDGIYFQPEDEALSL 72
           SG  L   +R FP +   +E+++   D + A D IY   +D+ + L
Sbjct: 396 SGQKLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGL 441


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,062
Number of Sequences: 224733
Number of extensions: 480824
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 73,234,838
effective HSP length: 79
effective length of query: 26
effective length of database: 55,480,931
effective search space: 1442504206
effective search space used: 1442504206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)