GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002600-TA|BGIBMGA002600-PA|undefined
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    28   1.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.4  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   4.5  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    26   6.0  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   6.0  

>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 22  SGFAFPDQRRERKLEPVITPPVLPVLEHLERDPSTLLPHEKRAQVKPK-FGGGGFNLAPS 80
           S F    Q   +++  ++T P+      ++ D    LP  K  ++  K FG GG+ LAP 
Sbjct: 100 SFFGLSSQPFSKEICDLLTAPLEVDDIEIKPDGILYLPEIKYRRILNKAFGPGGWGLAPR 159

Query: 81  GN 82
           GN
Sbjct: 160 GN 161


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 201 LDVRQRGVPNFPFPELLGRGKGIGAAAFRNGKSNVSPRLGDDFVT 245
           L +  R +  F  P LL R KG  ++ F N       RL +D VT
Sbjct: 565 LGINLRALEFFYDPNLLLRVKGFQSSLFANDNGRKLVRLANDAVT 609


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 17  VSAAPSGFAFPDQRRE--RKLEPVITPPVLPVLEH-----LERDPSTLLPHEKRAQVKPK 69
           V+  P   +  D R    RK+ P   P + P L+          PS +LP     +V PK
Sbjct: 433 VNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAPSTPSKVLP-AMSPKVAPK 491

Query: 70  FGGGGFNLAPS 80
           F GG  + APS
Sbjct: 492 FQGGRSSTAPS 502


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 21  PSGFAFPDQ--RRERKLEPVITPPVLPVLEHLERDPSTLLPHEKRA 64
           P   +FP    +     +   TP   P++EHL R  S L P    A
Sbjct: 215 PQSLSFPSSFDQSNYNFQAASTPQFNPLIEHLRRSNSPLNPSHDSA 260


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 17  VSAAPSGFAFPDQRRERKLEPVITPPVLPVLEHLERD 53
           VSA  SG+AF + +R R    +    VLP  +HL  D
Sbjct: 181 VSARLSGYAFANSKRNRDFHRIF--KVLPPEDHLIDD 215


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.140    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,272
Number of Sequences: 5004
Number of extensions: 28503
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 5
length of query: 250
length of database: 2,362,478
effective HSP length: 71
effective length of query: 179
effective length of database: 2,007,194
effective search space: 359287726
effective search space used: 359287726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)