GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002600-TA|BGIBMGA002600-PA|undefined
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0871 - 22075553-22075731,22075815-22076028,22076309-220763...    28   6.2  
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366...    28   6.2  
01_01_0082 + 625198-625719                                             28   6.2  

>08_02_0871 -
           22075553-22075731,22075815-22076028,22076309-22076351,
           22076557-22076616,22077522-22077593,22078163-22078368,
           22078782-22078837,22079540-22079777,22079908-22080081,
           22080157-22080292,22080822-22080853,22081563-22081619,
           22081713-22081965,22082057-22082145,22082590-22082643,
           22084016-22084207,22085338-22085499
          Length = 738

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 199 GLLDVRQRGVPNFPFPELLGRGKG 222
           G +   QR  P+FPFPEL+  G G
Sbjct: 528 GPMPESQRLWPSFPFPELISSGSG 551


>05_07_0212 +
           28434612-28435931,28436012-28436044,28436557-28436670,
           28436767-28437102,28437221-28437283,28437364-28437519,
           28437650-28437715,28439074-28439310,28439403-28439678,
           28440060-28440248,28440459-28440620
          Length = 983

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 26  FPDQRRERKLEPVITPPVLPVLEHLERDPSTLLPHEKRAQVKPKFGGG 73
           F D+    KLE    PP++ ++ H++   +TLL + ++++V     GG
Sbjct: 414 FLDEEDLDKLED--RPPIVTIMGHVDHGKTTLLDYIRKSKVVASEAGG 459


>01_01_0082 + 625198-625719
          Length = 173

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 37  PVITPPVLPVLEHLERDPSTLLPHEKRAQVK---PKFGGGGFNLAPSGN 82
           PV  PP  PV       P    P           P +GGGG+N  PS N
Sbjct: 62  PVYYPPPPPVYYPPPSPPPVAYPPPTTPSTNCPPPPYGGGGYNPTPSYN 110


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.140    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,869,356
Number of Sequences: 37544
Number of extensions: 251332
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 4
length of query: 250
length of database: 14,793,348
effective HSP length: 80
effective length of query: 170
effective length of database: 11,789,828
effective search space: 2004270760
effective search space used: 2004270760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)