GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002600-TA|BGIBMGA002600-PA|undefined
         (250 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    26   1.2  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   3.7  

>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 16/61 (26%), Positives = 23/61 (37%)

Query: 189 FAQPNPSFGDGLLDVRQRGVPNFPFPELLGRGKGIGAAAFRNGKSNVSPRLGDDFVTVVV 248
           +A   PS G  +++         P       G   GA    NG+  +SP+L    V   V
Sbjct: 128 YASEGPSTGTNVINNNNNNSTTSPQDLSTASGGSSGANDGNNGRPEISPKLSPGSVVESV 187

Query: 249 S 249
           S
Sbjct: 188 S 188


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 18  SAAPSGFAFPDQRRERKLEPVI---TPPVLPVLEHLERDP 54
           S  P+    P+ R E K  P +   TPPV P+L   ++ P
Sbjct: 107 SQPPTTRFAPEPRAEVKFVPSVPLKTPPVRPLLPQQQQHP 146


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.140    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,144
Number of Sequences: 2123
Number of extensions: 6343
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 250
length of database: 516,269
effective HSP length: 62
effective length of query: 188
effective length of database: 384,643
effective search space: 72312884
effective search space used: 72312884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)