GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002599-TA|BGIBMGA002599-PA|undefined
         (185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    26   3.9  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   5.1  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    25   9.0  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.0  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   9.0  

>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 70  HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRAS 105
           H P +  DK+     VP +A++  + G S+P   AS
Sbjct: 65  HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 70  HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASWPYGTHLHCLIAQHSSSVSTHRR 128
           +NP+ +   S +++ VP+  S + S   +  T      Y  H+  +I  +  S S   R
Sbjct: 198 NNPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMVYLLYSVHVDKIIQYYVDSFSVSER 256


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 31  ISPARWKIFPLSYIPTTGDLRRNNRSLLIHH--QRIKNFG-YHNPRILADKSKSSTVVPQ 87
           +SP+ W+ + LS  P T D     +  +  H  + + N G + N  +    +K + +VP 
Sbjct: 570 LSPSVWRYYLLSSRPETSDTMFTWKEFITRHNSELLANLGNFVNRTLKFTTAKYNGLVPH 629

Query: 88  QASIAASTGPSQPTHRASWPYGTHLHCLIAQHSSSVSTHRRLRAVLATITQHSAQ 142
                  T PS    +    +   ++ L+A++++++    +LR  L    + SA+
Sbjct: 630 YL-----TDPSVGAGKLKADFVKDVNALLAKYNAALEA-SKLREGLRLAMEISAR 678


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 59  IHHQRIKNFGYHNPRILADKSKSSTVVPQQASIAASTGPSQP 100
           +H+ R+    +  P    + S+ + +V  + + A  T PS P
Sbjct: 66  LHYDRLSGISFFQPNDPEELSRKTLLVKNKKTGAIETAPSIP 107


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 140 SAQFRLTANFEQHWRHARSIQA 161
           S++  + +NFEQHW  A   ++
Sbjct: 365 SSRMSMDSNFEQHWYDAEDYES 386


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 60  HHQRIKNFGYHNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASWPYGTHLHCLIAQH 119
           HH+R K   + N  +L       TV+ +   ++A+  PS  ++    PY       + Q 
Sbjct: 371 HHERRKEGAFINKSLLT----LGTVISR---LSAAANPSLTSNSGHIPYRESKLTRLLQQ 423

Query: 120 SSSVSTHRRLRAVLATITQHSAQFRLTANF 149
           S S  +   L A ++  + H+ +   T  F
Sbjct: 424 SLSGQSQISLLATISIESNHTMETTNTLKF 453


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.129    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 876,262
Number of Sequences: 5004
Number of extensions: 33165
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 7
length of query: 185
length of database: 2,362,478
effective HSP length: 69
effective length of query: 116
effective length of database: 2,017,202
effective search space: 233995432
effective search space used: 233995432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)