GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002599-TA|BGIBMGA002599-PA|undefined
         (185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    31   0.74 
12_01_0989 + 10048036-10048125,10048232-10048816,10048930-100493...    30   1.3  
08_01_0878 + 8624616-8624761,8625861-8626274,8626895-8626945,862...    28   5.2  
07_01_0090 - 690870-691613                                             27   6.9  
05_03_0424 - 13795721-13795900,13796134-13796202,13796260-137963...    27   6.9  
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     27   9.1  

>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
            3675973-3676042,3676157-3676224
          Length = 1337

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 134  ATITQHSAQFRLTANFEQHWRHARSIQAQPRLTAGFEQHWPLQANL 179
            AT+     Q   + NFE HW    ++ +  + T G+E+  P+ +NL
Sbjct: 1217 ATLLHDMQQAGFSPNFEMHWSVISNLSSNAKRTTGYEK--PILSNL 1260


>12_01_0989 +
           10048036-10048125,10048232-10048816,10048930-10049331,
           10049419-10049477,10049711-10049801,10050243-10050329,
           10050723-10050791
          Length = 460

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 54  NRSLLIHHQRIKNFGYHNPRILADKSKS--STVVPQQASIAASTGPSQPTHRA 104
           NRS+L   Q+ KNFG       A  SK+  +T+  + + + ++TGP + T  A
Sbjct: 298 NRSILEAFQKSKNFGRCETGNAASSSKNLGTTIAARISQLESATGPVKHTDSA 350


>08_01_0878 +
           8624616-8624761,8625861-8626274,8626895-8626945,
           8627179-8627215,8629535-8630059
          Length = 390

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/51 (33%), Positives = 21/51 (41%)

Query: 58  LIHHQRIKNFGYHNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASWPY 108
           L HH R       NPR      KS +V P Q    A +  +  TH+   PY
Sbjct: 49  LDHHHRYPCIQIKNPRYNPQIPKSKSVHPNQNPQIAKSPRTPVTHQLPPPY 99


>07_01_0090 - 690870-691613
          Length = 247

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 132 VLATITQHSAQFRLTANFEQHWRHARSIQAQPRLTAGFEQHW 173
           V+AT+T   A  R    F   WRH R +++   LT      W
Sbjct: 53  VVATVTARPAVARRWV-FSTRWRHGRRLRSGAGLTVAMGVQW 93


>05_03_0424 -
           13795721-13795900,13796134-13796202,13796260-13796385,
           13797224-13798166,13798263-13799248
          Length = 767

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 81  SSTVVPQQASIAASTG-PSQPTHRASWPYGTHLHCLIAQHSSSVSTHRRLRA---VLATI 136
           +S ++P+  S+AA     +   HRAS+PY   L  L++  +SS S+     A    L  +
Sbjct: 51  ASNLLPKCRSLAAVKQLHAHLLHRASFPYNHFLSKLLSLFTSSSSSSAAAAASDYALLLL 110

Query: 137 TQHSAQFRLTAN 148
             HSA    + N
Sbjct: 111 ASHSAPTAFSYN 122


>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 75   LADKSKSSTVVPQQASIA-ASTGPSQPTHRASW 106
            LAD     T  P+  SI  AST PSQ  H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.129    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,539,410
Number of Sequences: 37544
Number of extensions: 213780
Number of successful extensions: 464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 7
length of query: 185
length of database: 14,793,348
effective HSP length: 78
effective length of query: 107
effective length of database: 11,864,916
effective search space: 1269546012
effective search space used: 1269546012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)