GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002599-TA|BGIBMGA002599-PA|undefined
         (185 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    29   1.5  
Z68879-10|CAA93082.2|  473|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z69884-3|CAA93750.1|  285|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    27   8.1  

>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 66  NFGYHNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASW 106
           +FG+H P +  D++K+  VV ++A + A+ G      +  W
Sbjct: 188 SFGFHLPHVSEDRTKTG-VVEREAKLIAANGKFHSVPKRRW 227


>Z68879-10|CAA93082.2|  473|Caenorhabditis elegans Hypothetical
           protein K08F4.2 protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 89  ASIAASTGPSQPTHRASWPYGTHLHCLIAQHSSSVSTHRRLRAVLATITQHSAQ 142
           A++    G SQP  + S+  G  +H     H    S H++ +   A + Q   Q
Sbjct: 252 ANLVGGGGKSQPPQQQSYGQGQQIHQQTQMHHMQPSMHQQQQGSHAPLYQQQRQ 305


>Z69884-3|CAA93750.1|  285|Caenorhabditis elegans Hypothetical
           protein F31F6.3 protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 81  SSTVVPQQASIAASTGPSQPTHRASWPYGTHLHCLIAQHSSSVSTHRRLRAVLATITQHS 140
           SS + P ++  +     S PT+     +GT+    +   SSS+   RR R + AT+T   
Sbjct: 214 SSEISPNKSDSSVLLNKSPPTNSPIIKFGTYPKIHLQNVSSSMLNARR-RQLTATVTTVD 272

Query: 141 AQ 142
           +Q
Sbjct: 273 SQ 274


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 1   MPESRLRHFQDKAHIYKFRTTTFGPSVYRAISPARWKIFPLSYIPTTGDLRRNNRSLLIH 60
           M ++  RH     H ++ ++   G ++   ++P  ++I   + I   G    +NR +   
Sbjct: 275 MTKNETRHVDHCKHAFEMKSDMVGEALQVCVNPYHYEIVIGTMI--VGQRDHDNRDMPPP 332

Query: 61  HQRIKNFGYHNP 72
           HQR    G  +P
Sbjct: 333 HQRYHTPGRQDP 344


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.129    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,700,581
Number of Sequences: 27539
Number of extensions: 181130
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 4
length of query: 185
length of database: 12,573,161
effective HSP length: 77
effective length of query: 108
effective length of database: 10,452,658
effective search space: 1128887064
effective search space used: 1128887064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)