GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002598-TA|BGIBMGA002598-PA|undefined
         (234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.44 
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    28   1.3  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   7.2  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   9.5  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 100 YKAVETTQIRAPDTRYKNTEYPESTLVNRNIRDQYDLYPSVAMNPSQWRP 149
           Y A+ TT I         + Y    L N++  D Y+L P  A NPS+  P
Sbjct: 269 YTAMHTTSIFKSVFNILGSFYTMRLLRNKHDGDSYELVPVFAKNPSKTPP 318


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 63  RRGIHG-FDDDRGVIKTLSYDNNNKRKDDSGEVPIIAGYKAVETTQIRAPDTRYKNTE 119
           R+G H  F  D+    TL YDNNN  ++D  +V I    +  E ++ +  D R +  +
Sbjct: 766 RKGQHNSFSYDKS---TLFYDNNNNLEEDLPDVNISISSRNEEASKTKPFDDRQQRLQ 820


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 44  EDVEVKHTIIVSTKLRNNNRRGIHGFDDDRGVIKTLSYDNNNKRKDDSGEVPIIAGYKAV 103
           E+VE     I     R N++   H FD+ +  ++TL  +NN  ++D + +   +   + +
Sbjct: 599 EEVEKLTDEITQLSERYNDK--CHEFDELQKRLQTLEEENNKAKEDSTSKTSNL--LEQL 654

Query: 104 ETTQIRAPDTRYKNTE 119
           + T+      R +N E
Sbjct: 655 KMTEAEVDSLRKENEE 670


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 171 DRAAYENKLHRRIAENSVKDFYCKKCME 198
           D  ++ + LH    ++S+  +YCKK M+
Sbjct: 230 DGPSFRSMLHELEQKSSLMKYYCKKIMK 257


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 37  NSSKAEDEDVE---VKHTIIVSTKLRNNNRRGIHGF 69
           N++K +DE ++   V+H + +  K+ +N +  +HGF
Sbjct: 251 NAAKPDDEAIKNIGVEHIVDMIKKIMDNVQGRVHGF 286


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,161
Number of Sequences: 5004
Number of extensions: 50458
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 5
length of query: 234
length of database: 2,362,478
effective HSP length: 71
effective length of query: 163
effective length of database: 2,007,194
effective search space: 327172622
effective search space used: 327172622
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)