GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002598-TA|BGIBMGA002598-PA|undefined
         (234 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    34   0.10 
U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     28   5.0  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL033514-11|CAE47472.1|  436|Caenorhabditis elegans Hypothetical...    28   6.6  
AL033514-10|CAA22098.1|  605|Caenorhabditis elegans Hypothetical...    28   6.6  
AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-depende...    27   8.8  
AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical...    27   8.8  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 62
           protein.
          Length = 1256

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 82  DNNNKRKDDSGEVPIIAGYKAVETTQIRAPDTRYKNTEYPESTLVNRNIRDQ 133
           + NN+ K  +GE P++A   AVE T+ +AP  R +N      T  ++    Q
Sbjct: 901 EQNNRAKSTTGEQPVVADSTAVEVTKKKAP-ARKRNANGTTKTAPSKKTAQQ 951


>U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical
           protein C28C12.11 protein.
          Length = 250

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 77  KTLSYDNNNKRKDDSGEVPIIAGYKAVETTQIRAPDTRYKNTE 119
           K   +D++++R D +GE  ++AG + V  T     D+RY   E
Sbjct: 206 KKFFFDDDSQRDDQNGEPVLLAGSEEVAGTTTILNDSRYSRIE 248


>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 6   SVCLAVCVFSGTSHGVSTKLNF----SGEETSAVTNSSKAEDEDVEVKHTIIVSTKLRNN 61
           ++C+     + T+H  +   N     S +++  + N+S  ++E+V  + TI+ + K +N 
Sbjct: 221 NICVVYAPVAATTHVCTMTKNVLPTTSSQKSLELRNNSTVQNENVNYRKTILENGKCQNE 280

Query: 62  NRR 64
           +R+
Sbjct: 281 SRK 283


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 6   SVCLAVCVFSGTSHGVSTKLNF----SGEETSAVTNSSKAEDEDVEVKHTIIVSTKLRNN 61
           ++C+     + T+H  +   N     S +++  + N+S  ++E+V  + TI+ + K +N 
Sbjct: 221 NICVVYAPVAATTHVCTMTKNVLPTTSSQKSLELRNNSTVQNENVNYRKTILENGKCQNE 280

Query: 62  NRR 64
           +R+
Sbjct: 281 SRK 283


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 126  VNRNIRDQYDLYPSVAMNPSQWRPSSIYSNINWNQGVPY-NIGRNADRAAYENKLHRRIA 184
            +N+N+ DQ  ++ +V    ++ R S+   +   N G+P  ++      +A + K+HR   
Sbjct: 1333 LNKNVEDQSPIFHTVMRKKTKVRRSNSEHDTIMNVGIPMTSVPIIRSPSARDEKVHRVAI 1392

Query: 185  ENSVKDF 191
               ++D+
Sbjct: 1393 SPPIRDY 1399


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical protein
            F35H10.10 protein.
          Length = 1404

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 126  VNRNIRDQYDLYPSVAMNPSQWRPSSIYSNINWNQGVPY-NIGRNADRAAYENKLHRRIA 184
            +N+N+ DQ  ++ +V    ++ R S+   +   N G+P  ++      +A + K+HR   
Sbjct: 1333 LNKNVEDQSPIFHTVMRKKTKVRRSNSEHDTIMNVGIPMTSVPIIRSPSARDEKVHRVAI 1392

Query: 185  ENSVKDF 191
               ++D+
Sbjct: 1393 SPPIRDY 1399


>AL033514-11|CAE47472.1|  436|Caenorhabditis elegans Hypothetical
          protein Y75B8A.9b protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 30 EETSAVTNSSKAEDEDVEVKHTIIVSTKLRNNNRRGIHGFDDDRGVIK 77
          E+   V NS  A   D++ KH      KL NN  +G H FDDD G  K
Sbjct: 31 EDNERVWNSGNA---DIQRKHE-----KL-NNGGQGRHDFDDDEGAEK 69


>AL033514-10|CAA22098.1|  605|Caenorhabditis elegans Hypothetical
          protein Y75B8A.9a protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 30 EETSAVTNSSKAEDEDVEVKHTIIVSTKLRNNNRRGIHGFDDDRGVIK 77
          E+   V NS  A   D++ KH      KL NN  +G H FDDD G  K
Sbjct: 31 EDNERVWNSGNA---DIQRKHE-----KL-NNGGQGRHDFDDDEGAEK 69


>AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-dependent
           flavin reductase protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 17  TSHGVSTKLNFSGEETSAVTNSSKAEDEDVEVKHTI---IVSTKLRNNNRRGIHGFDDDR 73
           TS  ++TK  F  E      N     DED+E +  I        L+N        F D R
Sbjct: 169 TSVQITTKYRFL-ELGGESGNDDDDSDEDLEPQIEIPDYFPLKVLKNRRLTSAEHFQDTR 227

Query: 74  GVIKTLSYDNNNKRKDDSGEVPIIAGYKAVETTQI 108
            V   +S  N +K     G+V ++  Y   ET +I
Sbjct: 228 LVDFEISDRNRSKMGFQPGDVLMVRPYNPEETVKI 262


>AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical
           protein Y113G7A.8 protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 17  TSHGVSTKLNFSGEETSAVTNSSKAEDEDVEVKHTI---IVSTKLRNNNRRGIHGFDDDR 73
           TS  ++TK  F  E      N     DED+E +  I        L+N        F D R
Sbjct: 169 TSVQITTKYRFL-ELGGESGNDDDDSDEDLEPQIEIPDYFPLKVLKNRRLTSAEHFQDTR 227

Query: 74  GVIKTLSYDNNNKRKDDSGEVPIIAGYKAVETTQI 108
            V   +S  N +K     G+V ++  Y   ET +I
Sbjct: 228 LVDFEISDRNRSKMGFQPGDVLMVRPYNPEETVKI 262


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
            protein Y18D10A.1 protein.
          Length = 1634

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 78   TLSYDNNNKRKDDSGEVPIIAGYKAVETTQIRAPDTRYKNT 118
            +L   +++   DD     I+AG K  +TT+ +AP TR   T
Sbjct: 1072 SLPAPSSSTTSDDDLMSDILAGAKTTKTTKPKAPPTRVAQT 1112


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,209,386
Number of Sequences: 27539
Number of extensions: 270905
Number of successful extensions: 622
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 11
length of query: 234
length of database: 12,573,161
effective HSP length: 79
effective length of query: 155
effective length of database: 10,397,580
effective search space: 1611624900
effective search space used: 1611624900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)