GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002595-TA|BGIBMGA002595-PA|undefined
         (174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    29   0.38 
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   1.2  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    27   1.5  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   4.7  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   4.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   4.7  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   6.2  

>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 33  HSVDGTVETDGLRHLLNNTTYSKTPFCRNSYVKMAAVDSKLHL 75
           H+VD  +E   L  L+++   S  PF  + + +   VD   H+
Sbjct: 473 HNVDEYIEQQDLDELIHSPIASTNPFLADQFARSETVDLNAHI 515


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 77   FELLRCNMRSLALALWKKIRVPGLSASSCAIRD 109
            +E++   +R +A+ L K IRV GLS S    RD
Sbjct: 1505 YEIVISRIRYMAVQLEKNIRVVGLSVSVANARD 1537


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 134 IQNYRALNGVFSKATPLPLEADYLLYYVSNLNTHEDFW 171
           ++NY  LNG     T L    D  + Y S+ +TH   W
Sbjct: 83  VKNYGVLNGCKGAITDLQWSRDSRVVYCSSSDTHLMSW 120


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/59 (20%), Positives = 30/59 (50%)

Query: 5   VLPDNVSVLGYVKRGGGLRRARYRKELYHSVDGTVETDGLRHLLNNTTYSKTPFCRNSY 63
           ++ +++++LG +       ++R   E++ +VD T      ++ L N   +  PF ++ Y
Sbjct: 324 IVLESLNLLGKLPNAISSLKSRTSAEMFTTVDSTSRAIVNKYSLGNNVSTVNPFSKSLY 382


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 160 YVSNLNTHEDFWHNI 174
           YVS +N H ++W N+
Sbjct: 732 YVSAMNAHSEYWKNV 746


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 63  YVKMAAVDSKLHLNFELLRCNMRSLALALWKKIRVPGLSASSCAIRD 109
           Y++ AA+D +  L   L+   +RSL   +   IR+ G    +C + D
Sbjct: 457 YIETAALDGETSLKTRLVNSTLRSLCKDINDLIRLSG----TCTVED 499


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 113 GIPIKYTVHLHIFELTSLI-------------TAIQNYRALNGVFSKATPLPLEADYLLY 159
           G P K++   HIF+ T L              T    ++  NG ++K TP+  +   LLY
Sbjct: 43  GCPAKFSKISHIFKKTPLFDQKSLILYLLWFSTLTLLWKCTNGKWAKGTPIDDKGTRLLY 102

Query: 160 YVSNLNT 166
            ++  N+
Sbjct: 103 KINGFNS 109


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 816,976
Number of Sequences: 5004
Number of extensions: 32051
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 2,362,478
effective HSP length: 68
effective length of query: 106
effective length of database: 2,022,206
effective search space: 214353836
effective search space used: 214353836
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)