GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002595-TA|BGIBMGA002595-PA|undefined
         (174 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0967 + 21318974-21319140,21321677-21321821,21322045-213221...    29   1.6  
11_01_0086 + 646609-647791,648838-649115,650502-650735                 28   3.6  
01_06_0227 - 27686525-27686607,27686731-27686803,27687027-276873...    28   4.8  
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199...    27   6.3  
02_05_0623 + 30446420-30446525,30446635-30446715,30446811-304469...    27   8.3  

>04_03_0967 +
           21318974-21319140,21321677-21321821,21322045-21322164,
           21322261-21322395,21322503-21322564,21322804-21322879,
           21323555-21323656,21323732-21323848,21324403-21324461,
           21324927-21325101,21325233-21325367,21325429-21325545,
           21325686-21325794,21325939-21326051,21326561-21326615,
           21326657-21326769
          Length = 599

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 46  HLLNNTTYSKTPFCRNSYVKMAAVDSKLHLNFELLRCNMRSLALALWKKIRVPGLSASSC 105
           +L+N  +   T   R+ +V   A  SK+ L F L R      A++  K   + G  A+S 
Sbjct: 155 NLINYASLVTTNAARHRHV---AGKSKVLLEFGLRRAQGPDGAISASKYCFMGGFDATSN 211

Query: 106 AIRDKSFGIPIKYTVHLHIF 125
            +    FGIP++ T H H +
Sbjct: 212 VLAGNLFGIPLRGT-HSHAY 230


>11_01_0086 + 646609-647791,648838-649115,650502-650735
          Length = 564

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 1   MQAAVLPDNVSVLGYVKRGGGLRRARYR 28
           M+AA+  +N+ V  +V RGG LR   YR
Sbjct: 294 MEAAMFRNNLDVRAFVSRGGHLRTWFYR 321


>01_06_0227 -
           27686525-27686607,27686731-27686803,27687027-27687315,
           27687755-27687832,27687869-27687992,27688796-27688940,
           27689046-27689166,27689386-27689542,27690704-27690840,
           27691863-27692122,27692199-27692387,27692572-27692775,
           27693390-27693436,27694435-27694462
          Length = 644

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/82 (19%), Positives = 35/82 (42%)

Query: 51  TTYSKTPFCRNSYVKMAAVDSKLHLNFELLRCNMRSLALALWKKIRVPGLSASSCAIRDK 110
           TT +   FC   Y+     +  +H NFE    + +  A + W  + +  +      ++  
Sbjct: 456 TTENMEDFCNEIYILSLLFNHNMHTNFENFTISFQPAAASKWGLMCIHRMKIVHRDLKSA 515

Query: 111 SFGIPIKYTVHLHIFELTSLIT 132
           +  +   +TV +  F L+ ++T
Sbjct: 516 NCLVNKHWTVKICDFGLSRVMT 537


>12_01_0273 -
           1989058-1989349,1989730-1989837,1990315-1990508,
           1990601-1990717,1990801-1990966,1991323-1991490,
           1991734-1993052
          Length = 787

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 23  RRARYRKELYHSVDGTVE-TDGLRHLLNNTTYSKTPFCRNSYV------KMAAVDSKLHL 75
           RR+  R  +   +D  VE  DG     N+ ++ +TP C  +        K     SK H 
Sbjct: 368 RRSSRRNSMSSDIDSLVEGEDGGEETRNDRSWVRTPSCMRAPTLPKPGKKQGETISKGHK 427

Query: 76  NFELL 80
           N+EL+
Sbjct: 428 NYELM 432


>02_05_0623 +
           30446420-30446525,30446635-30446715,30446811-30446987,
           30447629-30447799,30448239-30448448,30448634-30448722,
           30449318-30450010
          Length = 508

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 9   NVSVLGYVKRGGGLRRARYRKELYHSVDGTVETDGLRHLLNNTTYS 54
           N  V G V+     RRA   K + H  D   + DGLRH  + T YS
Sbjct: 461 NEIVFGAVQEVDSKRRAVEIKPMNHG-DPQYDQDGLRHRSSYTGYS 505


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,074,335
Number of Sequences: 37544
Number of extensions: 192733
Number of successful extensions: 370
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 14,793,348
effective HSP length: 77
effective length of query: 97
effective length of database: 11,902,460
effective search space: 1154538620
effective search space used: 1154538620
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)