GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002595-TA|BGIBMGA002595-PA|undefined
         (174 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    30   0.034
AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase...    23   6.9  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 30.3 bits (65), Expect = 0.034
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 26  RYRKELYHSVDGTVETDGLRHLLNNTTYSKTPFCRNSYVKMAAVDSKL 73
           R+ KELY    G V+     HLL N      P   N  +  AA+D+ L
Sbjct: 603 RFVKELYDVRSGCVQEQDGTHLLMNLIKVNDPVVMNRLIDSAAIDTIL 650


>AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase
          alternate isoform protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 20 GGLRRARYRKELYHSVDGTVETDGLRHLLNNTTYS 54
          GG+   +Y  E  H   G  +  G  H L  +TYS
Sbjct: 65 GGVLGNKYIFEQLHFHWGIGDGSGCEHTLEGSTYS 99


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,087
Number of Sequences: 2123
Number of extensions: 6786
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 2
length of query: 174
length of database: 516,269
effective HSP length: 60
effective length of query: 114
effective length of database: 388,889
effective search space: 44333346
effective search space used: 44333346
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)