GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002595-TA|BGIBMGA002595-PA|undefined
         (174 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039042-13|AAR12988.1|  249|Caenorhabditis elegans Hypothetical...    29   1.8  
AC024817-33|AAP13743.1|  238|Caenorhabditis elegans Hypothetical...    29   2.4  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL034365-7|CAA22259.1|  421|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF024502-7|AAB70377.3|  352|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF039042-13|AAR12988.1|  249|Caenorhabditis elegans Hypothetical
          protein ZK697.14 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 29 KELYHSVDGTVETDGLRHLLNN 50
          K+LY +VD  V TDGL  L+NN
Sbjct: 67 KKLYENVDTLVGTDGLTVLINN 88


>AC024817-33|AAP13743.1|  238|Caenorhabditis elegans Hypothetical
           protein Y54G2A.17c protein.
          Length = 238

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 75  LNFELLRCNMRSLALALWKKIRVPGLSASSCAIRDKSFGIPIKYT-VHLHIFELTSLITA 133
           L F L R    +  L   K   + G  A+S  +  K +GIP+K T  H  I   +S    
Sbjct: 161 LEFGLRRAQGPNGGLTASKYCYIGGFDATSNVLAGKLYGIPVKGTQAHSFICSFSS-PAE 219

Query: 134 IQNYRALNGVFS 145
           +++Y ++ G F+
Sbjct: 220 VEHYLSIMGDFA 231


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 127 LTSLITAIQNYRALNGVFSK--ATPLPLEADYLLYYVSNLNTH 167
           LT ++  I N+ +L   F++    P+P+E D+  Y + N  TH
Sbjct: 154 LTVIVFDINNFLSLK-YFNRFVGKPMPVELDFKYYLLMNQKTH 195


>Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical
           protein T12G3.1 protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 129 SLITAIQNYRALNGVFSKATPLPLEADYLLYY 160
           S++  ++N +AL  +  KA  L   ADY LYY
Sbjct: 25  SVLMILKNDQALQQISEKARELFPSADYRLYY 56


>AL034365-7|CAA22259.1|  421|Caenorhabditis elegans Hypothetical
           protein Y69E1A.7 protein.
          Length = 421

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 100 LSASSCAIRDKSFGIPIKYTVHLHIFEL 127
           LS SSC+  D+SF  P   T  L I EL
Sbjct: 2   LSDSSCSSSDRSFKFPFDTTDALSIHEL 29


>AF024502-7|AAB70377.3|  352|Caenorhabditis elegans Hypothetical
           protein M151.6 protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 120 VHLHIFELTSLITAIQNYRALNGVFS 145
           VH++ FE TSL    +++ A+N VFS
Sbjct: 103 VHINFFESTSLRLKTKSFPAVNFVFS 128


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,306,301
Number of Sequences: 27539
Number of extensions: 166097
Number of successful extensions: 319
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 6
length of query: 174
length of database: 12,573,161
effective HSP length: 77
effective length of query: 97
effective length of database: 10,452,658
effective search space: 1013907826
effective search space used: 1013907826
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)